Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OMK57_RS02205 Genome accession   NZ_CP110264
Coordinates   433745..434695 (+) Length   316 a.a.
NCBI ID   WP_044161881.1    Uniprot ID   -
Organism   Bacillus halotolerans strain HMB20199     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428745..439695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS02180 (OMK57_02180) rapC 430134..431282 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  OMK57_RS02185 (OMK57_02185) phrC 431266..431388 (+) 123 WP_010333023.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  OMK57_RS02190 (OMK57_02190) - 431493..431585 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  OMK57_RS02195 (OMK57_02195) - 431732..431842 (-) 111 WP_024120215.1 YjcZ family sporulation protein -
  OMK57_RS02200 (OMK57_02200) - 431995..433359 (-) 1365 WP_069487496.1 aspartate kinase -
  OMK57_RS02205 (OMK57_02205) ceuB 433745..434695 (+) 951 WP_044161881.1 petrobactin ABC transporter permease YclN Machinery gene
  OMK57_RS02210 (OMK57_02210) yclO 434688..435635 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -
  OMK57_RS02215 (OMK57_02215) yclP 435629..436387 (+) 759 WP_044161880.1 petrobactin ABC transporter ATP-binding protein YclP -
  OMK57_RS02220 (OMK57_02220) - 436409..437362 (+) 954 WP_069487497.1 siderophore ABC transporter substrate-binding protein -
  OMK57_RS02225 (OMK57_02225) - 437411..438829 (-) 1419 WP_044161878.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34983.43 Da        Isoelectric Point: 9.8154

>NTDB_id=753536 OMK57_RS02205 WP_044161881.1 433745..434695(+) (ceuB) [Bacillus halotolerans strain HMB20199]
MKLRYLFFLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLIAFVFALVGNFLFMKILEKIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=753536 OMK57_RS02205 WP_044161881.1 433745..434695(+) (ceuB) [Bacillus halotolerans strain HMB20199]
ATGAAGCTACGTTACTTATTTTTTCTGCTTATCATATTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATTTGTCGCC
GCTTGATCTCTTTGATTTAAGCAAAGAAGAGGCGTCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTCTGA
TCGCGGGCATGAGCATGAGCATCTGCGGCCTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACGGCC
GGCACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTACATCGGCAAGTCCTTTAATGAAAATGCT
GATTGCTTTTGTCTTTGCTTTAGTCGGCAATTTTCTGTTTATGAAAATTCTTGAAAAAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACCTGATC
CAGAACGTGTCATCATGGCTTCAGGGGGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTTTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTATCCCTGATTACGTCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCGATTTACAGAGGAGACAACCTGAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCATATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

100

0.541