Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   OMK57_RS02180 Genome accession   NZ_CP110264
Coordinates   430134..431282 (+) Length   382 a.a.
NCBI ID   WP_024120212.1    Uniprot ID   A0A7G7UCE4
Organism   Bacillus halotolerans strain HMB20199     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 425134..436282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS02160 (OMK57_02160) - 425505..426185 (-) 681 WP_044161887.1 ABC transporter ATP-binding protein -
  OMK57_RS02165 (OMK57_02165) - 426201..427655 (-) 1455 WP_059353096.1 ABC transporter permease -
  OMK57_RS02170 (OMK57_02170) yclJ 427868..428551 (+) 684 WP_024120210.1 two-component system response regulator YclJ -
  OMK57_RS02175 (OMK57_02175) - 428538..429947 (+) 1410 WP_082687805.1 HAMP domain-containing sensor histidine kinase -
  OMK57_RS02180 (OMK57_02180) rapC 430134..431282 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  OMK57_RS02185 (OMK57_02185) phrC 431266..431388 (+) 123 WP_010333023.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  OMK57_RS02190 (OMK57_02190) - 431493..431585 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  OMK57_RS02195 (OMK57_02195) - 431732..431842 (-) 111 WP_024120215.1 YjcZ family sporulation protein -
  OMK57_RS02200 (OMK57_02200) - 431995..433359 (-) 1365 WP_069487496.1 aspartate kinase -
  OMK57_RS02205 (OMK57_02205) ceuB 433745..434695 (+) 951 WP_044161881.1 petrobactin ABC transporter permease YclN Machinery gene
  OMK57_RS02210 (OMK57_02210) yclO 434688..435635 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45690.75 Da        Isoelectric Point: 5.2483

>NTDB_id=753534 OMK57_RS02180 WP_024120212.1 430134..431282(+) (rapC) [Bacillus halotolerans strain HMB20199]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVSDHIERAEFYFKIAEAYYYMKQTYF
SLIHIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALEMAEAEQKAQLVGRAFYNLGLCYYNQDLLD
PAIEHFEKAVSTFENSRITNSLPQAYFLITLIYYKRGKHEKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQAQPNTEG
IERCFRYLKNKNMYADIEDLGLEVAKYYYEQKWFELSASYFLRVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=753534 OMK57_RS02180 WP_024120212.1 430134..431282(+) (rapC) [Bacillus halotolerans strain HMB20199]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAAATATATCCGGACCTTCAGCGT
GCCGGATGCCGAGGTGCTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGTTATATT
ACTCACTAATGGAATTTCGCCACCAGCTTATGCTTGATTATCTCGAGCCGCTGGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCAGAATTATCACGAAATATAGACAGCAACCAAGCTGATCTGAAAGGGCTTCTCGATTATTATGTGAATTTTTT
CCGCGGAATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTACAAACAGGCGGAGAAAAAACTTTCTT
TTGTTTCCGATCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTACTTT
TCATTGATTCATATCAAAAATGCATATGAAATTTATGTAGAGCAGGAAACCTATAATGTTCGGATTATCCAATGCCATTT
TGTGTTCGGGGTTAACCTCATGGATGAGAGAAATTTTGAACAAGCCGCACGGCATTTCAAATTGGCGCTGGAGATGGCGG
AAGCGGAACAAAAAGCCCAATTGGTCGGAAGAGCATTTTATAATTTAGGGCTGTGTTATTACAATCAAGACCTCCTCGAC
CCTGCCATTGAACATTTTGAGAAAGCGGTTTCCACTTTTGAAAACAGCAGAATCACCAATTCTCTGCCTCAAGCATATTT
TTTAATAACACTTATTTATTATAAACGCGGAAAACATGAGAAGGCCTCGGAATATCACAAGAGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGATTACGCGGTAAAATTTGAGTTTTTACAATCCCTATATCAGGCACAGCCCAATACAGAAGGA
ATCGAACGATGTTTCCGATATTTAAAAAATAAAAATATGTATGCTGATATAGAGGATTTAGGCCTAGAAGTAGCAAAATA
TTACTATGAACAAAAATGGTTTGAACTGTCTGCTTCCTACTTTCTTAGAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(224-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7UCE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

95.026

100

0.95
  rapF Bacillus subtilis subsp. subtilis str. 168

56.316

99.476

0.56