Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   UKS_RS04150 Genome accession   NZ_AP021887
Coordinates   806712..808679 (+) Length   655 a.a.
NCBI ID   WP_156011920.1    Uniprot ID   -
Organism   Streptococcus sp. 116-D4     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 801712..813679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS04135 (UKS_07690) - 802122..802682 (+) 561 WP_117304780.1 GTP pyrophosphokinase -
  UKS_RS04140 (UKS_07700) parC 803060..805531 (+) 2472 WP_156011918.1 DNA topoisomerase IV subunit A -
  UKS_RS04145 (UKS_07710) - 805667..806689 (+) 1023 WP_156011919.1 branched-chain amino acid aminotransferase -
  UKS_RS04150 (UKS_07720) amiA3 806712..808679 (+) 1968 WP_156011920.1 peptide ABC transporter substrate-binding protein Regulator
  UKS_RS04155 (UKS_07730) - 808777..809007 (+) 231 WP_000037113.1 DUF2969 domain-containing protein -
  UKS_RS04170 (UKS_07740) rpsA 809380..810582 (+) 1203 WP_049497665.1 30S ribosomal protein S1 -
  UKS_RS04175 (UKS_07750) - 810669..811166 (+) 498 WP_156011921.1 GAF domain-containing protein -
  UKS_RS04180 (UKS_07760) dnaX 811166..812821 (+) 1656 WP_156011922.1 DNA polymerase III subunit gamma/tau -
  UKS_RS04185 (UKS_07770) - 812849..813043 (+) 195 WP_001081602.1 DUF3272 domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72813.36 Da        Isoelectric Point: 4.8696

>NTDB_id=75352 UKS_RS04150 WP_156011920.1 806712..808679(+) (amiA3) [Streptococcus sp. 116-D4]
MKSKKWLLTAGVVLSTTALLVACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDIIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLREGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSFNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGEQWKDVE
LVDGKDSIYNPDKAKVAFEKAKKDLEAKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKTGSAMKHLGITKGKDKDVVAQLGLDQYKKLLDEADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELENHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=75352 UKS_RS04150 WP_156011920.1 806712..808679(+) (amiA3) [Streptococcus sp. 116-D4]
ATGAAATCGAAAAAATGGCTCTTAACAGCAGGAGTAGTCCTGAGTACAACAGCTCTTTTAGTAGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCGTATGTTTATGCAGTAGATCCAGCATCTTTGGACTATAGCATAGCTACTC
GTACATCTACAACCGATATCATCGGAAACGTGGTGGATGGTTTGATGGAAAACGATCAATACGGAAATGTTATTCCTTCC
TTAGCTGAAGATTGGTCTGTCTCAAAAGATGGTTTGACTTATACCTATAAACTTCGTGAAGGGGTTAAATGGTACACATC
AGAAGGTGAAGAATACGCAGAAGTAACAGCCCATGACTTTGTAACAGGATTGAAACACGTAGCTGACGGCAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATCAAGGGATTGGATGCCTACATGACTGGTGAAACCAATGATTTCTCTACAGTTGGT
GTTAAGGCCTTGGACGATTACACAGTCGAATATACCCTAAACAAACCAGAAAGCTTCTGGAACTCTAAAGTTACAACAGC
AACGATGTTGCCTGTAAATGAAGAATTTTTGAAGGCGTCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGAATTCTCT
ACAATGGTCCCTATATCTTGAAGACCTTGACGTCTAAATCGTTGATTGAATACGAGAAAAATCCAAATTATTGGGATAAA
GAAAAGGTAAAAATTGAGAAGATTAAATTGACTTACTACGATGGTTCTGATCAAGAATCGTTGATCCGTAGTTTCTCTTC
AGGTGCCTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCAACTTTGGAACAATACGGAGATAAAATTA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATTCAATAAAACTGCGAAAACA
AGTGAAGAACAAAAAACTTCTACAAAAGAAGCTATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
CCATTCTTATGCTGCCCAGCTAAATGGTGAAGACGGTGCGGATAAGATTATTCGTAACAGCCTCGTTCCTGACAACTTTG
TGCAAGCAGGTGGAAAGAACTTTGGTCAAATCGCACAAGCAGAGTTGGTGAACTATGGCGAGCAATGGAAGGACGTGGAG
TTAGTTGATGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGTTGCTTTTGAAAAAGCGAAGAAAGACTTGGAAGC
TAAAGGAGTAACTTTCCCAATTCACTTGGATGTCCCAGTTGAACAAACTGACACCATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCAATTGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGACGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATTACTTCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGTTATCAAGA
CCCAGCATCTTACTTGAATATCATGGATCCTAAAACAGGTTCTGCTATGAAACACCTTGGTATTACTAAAGGGAAAGATA
AGGATGTTGTAGCGCAACTTGGTTTAGACCAGTATAAGAAATTATTGGATGAAGCCGATTCAGAAACTACGAATCTTGAA
GAGCGCTATGAAAAATATGCCAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCGACAGCCTCATCTGGTGG
TTCTCCAGTTGTAAGTAATGTAGTACCATTCTCAAAACCATACTCACAAGTTGGTATTAAAGGTGACCCATATATCTTTA
AAGGAATGAAATTGCAAAAAGATATCGTTACGACAAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTA
GAGTCAAATGGTAAGTACCAAAAGGAACTAGAAAACCATATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.121

100

0.525
  amiA Streptococcus salivarius strain HSISS4

51.824

100

0.521
  amiA3 Streptococcus thermophilus LMG 18311

51.515

100

0.519

Multiple sequence alignment