Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OMP39_RS12305 Genome accession   NZ_CP110257
Coordinates   2707960..2709282 (-) Length   440 a.a.
NCBI ID   WP_264894566.1    Uniprot ID   -
Organism   Schlegelella aquatica strain LMG 23380     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2702960..2714282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP39_RS12285 (OMP39_12285) - 2704433..2704663 (-) 231 WP_264892004.1 PP0621 family protein -
  OMP39_RS12290 (OMP39_12290) ccsA 2704674..2705480 (-) 807 WP_264892005.1 cytochrome c biogenesis protein CcsA -
  OMP39_RS12295 (OMP39_12295) ffh 2705586..2706953 (+) 1368 WP_264892006.1 signal recognition particle protein -
  OMP39_RS12300 (OMP39_12300) - 2707201..2707926 (+) 726 WP_264892007.1 DUF2726 domain-containing protein -
  OMP39_RS12305 (OMP39_12305) pilA 2707960..2709282 (-) 1323 WP_264894566.1 signal recognition particle-docking protein FtsY Machinery gene
  OMP39_RS12310 (OMP39_12310) rsmD 2709385..2709963 (+) 579 WP_264892008.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OMP39_RS12315 (OMP39_12315) coaD 2709991..2710491 (+) 501 WP_264892009.1 pantetheine-phosphate adenylyltransferase -
  OMP39_RS12320 (OMP39_12320) - 2710541..2710831 (+) 291 WP_264892010.1 YfhL family 4Fe-4S dicluster ferredoxin -
  OMP39_RS12325 (OMP39_12325) - 2710983..2711405 (-) 423 WP_264892011.1 DUF4124 domain-containing protein -
  OMP39_RS12330 (OMP39_12330) pth 2711402..2712040 (-) 639 WP_264892012.1 aminoacyl-tRNA hydrolase -
  OMP39_RS12335 (OMP39_12335) - 2712170..2712799 (-) 630 WP_264892013.1 50S ribosomal protein L25/general stress protein Ctc -
  OMP39_RS12340 (OMP39_12340) - 2712899..2713861 (-) 963 WP_280925511.1 ribose-phosphate pyrophosphokinase -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 45648.40 Da        Isoelectric Point: 6.1855

>NTDB_id=753420 OMP39_RS12305 WP_264894566.1 2707960..2709282(-) (pilA) [Schlegelella aquatica strain LMG 23380]
MFSFFKKKPKTQEAPPPAPAAPESAPATPEPEKRSWLDRLRGAPAPASAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP
QAPAISQPAPAVPEPAAAPASVAAAASARAPAAEVPAVPPPAAAVVEEAPAEEVQPAAAAESRRSWIEKLKQGLRKTGTS
LTQVFTGTRIDEALYEELEAALLMADAGVKATEYLLQDLRRRVKESKATEPSAVKALLADAITDLLKPLEKSLAIGLHTP
TVIMVVGVNGAGKTTTIGKLTRRLAEADQKVLLAAADTFRAAAREQLAVWADRNQVEIVSQEGGDPAAVTFDAVHAGKAR
GCDVVIADTAGRLPTQLHLMEELRKIRRVITKADPTAPHEVLLVVDGNTGQNALAQVKAFDDALQLTGLIVTKLDGTAKG
GVLAAIARERPVPVYFIGVGEKLEDLQTFDAREFAQALLS

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=753420 OMP39_RS12305 WP_264894566.1 2707960..2709282(-) (pilA) [Schlegelella aquatica strain LMG 23380]
ATGTTCAGTTTCTTCAAGAAAAAGCCCAAGACGCAGGAGGCGCCGCCGCCTGCGCCCGCCGCCCCCGAGTCCGCCCCCGC
GACCCCCGAGCCCGAGAAGCGTTCCTGGCTCGACCGCCTGCGGGGCGCTCCCGCACCCGCGTCTGCACCCGCGCCTGCAC
CGGCGCCTGCACCCGCGCCTGCACCGGCGCCTGCACCCGCGCCTGCGCCTGCGCCTGCGCCTGCGCCTGCGCCAGCCCCG
CAAGCGCCGGCCATCTCCCAACCTGCGCCGGCGGTGCCTGAACCCGCAGCCGCGCCCGCGAGCGTGGCCGCCGCAGCCTC
GGCGCGGGCCCCGGCAGCCGAGGTCCCGGCCGTCCCGCCCCCTGCGGCCGCGGTCGTGGAGGAGGCCCCGGCCGAAGAGG
TGCAGCCGGCCGCGGCCGCCGAGTCGCGCCGCTCGTGGATCGAGAAGCTCAAACAAGGGCTGCGCAAGACAGGCACGAGC
CTGACGCAGGTCTTCACGGGCACCCGGATCGACGAGGCGCTCTACGAGGAACTGGAGGCCGCGCTGCTGATGGCCGACGC
GGGGGTGAAGGCCACGGAGTACCTGCTGCAGGACCTGCGGCGGCGGGTCAAGGAGTCCAAGGCCACGGAGCCCTCGGCGG
TCAAGGCGCTGCTCGCGGACGCGATCACCGATCTGCTCAAACCGCTCGAGAAGTCGCTGGCCATCGGCTTGCACACGCCC
ACCGTCATCATGGTGGTGGGCGTCAACGGTGCGGGCAAGACGACCACCATCGGCAAGCTCACGCGGCGCCTGGCCGAGGC
GGACCAGAAGGTGCTGCTCGCCGCAGCCGACACCTTCCGTGCCGCGGCACGCGAACAGTTGGCCGTGTGGGCGGACCGCA
ACCAGGTGGAGATCGTGAGCCAGGAAGGCGGCGATCCGGCCGCCGTCACCTTCGACGCCGTGCACGCGGGCAAGGCGCGG
GGATGCGACGTGGTGATCGCCGACACCGCCGGGCGTCTACCGACGCAGCTCCACTTGATGGAGGAGTTGCGCAAGATCCG
CCGTGTCATCACGAAGGCCGACCCCACCGCGCCGCACGAAGTGCTGCTCGTGGTGGACGGCAACACGGGCCAGAACGCGC
TGGCGCAGGTCAAGGCGTTCGACGATGCGCTGCAACTCACGGGTCTCATCGTCACCAAGCTCGACGGCACCGCCAAGGGG
GGCGTGCTGGCGGCCATCGCGCGCGAGCGTCCGGTGCCGGTGTACTTCATCGGCGTGGGCGAGAAGCTCGAAGACCTGCA
GACCTTCGACGCGCGCGAGTTCGCGCAGGCGCTGCTCAGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(240-439)

SRP54-type protein, helical bundle domain (SRP54_N)

(158-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.534

100

0.482