Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OMP39_RS00715 Genome accession   NZ_CP110257
Coordinates   157297..157797 (+) Length   166 a.a.
NCBI ID   WP_264892911.1    Uniprot ID   -
Organism   Schlegelella aquatica strain LMG 23380     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 152297..162797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP39_RS00700 (OMP39_00700) - 153446..153826 (+) 381 WP_264892908.1 hypothetical protein -
  OMP39_RS00705 (OMP39_00705) - 153828..155789 (-) 1962 WP_264892909.1 RecQ family ATP-dependent DNA helicase -
  OMP39_RS00710 (OMP39_00710) - 155966..157186 (+) 1221 WP_264892910.1 MFS transporter -
  OMP39_RS00715 (OMP39_00715) ssb 157297..157797 (+) 501 WP_264892911.1 single-stranded DNA-binding protein Machinery gene
  OMP39_RS00720 (OMP39_00720) - 157913..158884 (+) 972 WP_264892912.1 glucokinase -
  OMP39_RS00725 (OMP39_00725) mnmA 158977..160080 (-) 1104 WP_264892913.1 tRNA 2-thiouridine(34) synthase MnmA -
  OMP39_RS00730 (OMP39_00730) - 160077..160568 (-) 492 WP_264892914.1 NUDIX hydrolase -
  OMP39_RS00735 (OMP39_00735) - 160752..161867 (+) 1116 WP_264892915.1 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha -
  OMP39_RS00740 (OMP39_00740) panD 161864..162226 (+) 363 WP_264892916.1 aspartate 1-decarboxylase -
  OMP39_RS00745 (OMP39_00745) - 162334..162645 (+) 312 WP_264892917.1 NAD(P) transhydrogenase subunit alpha -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18168.06 Da        Isoelectric Point: 5.8385

>NTDB_id=753407 OMP39_RS00715 WP_264892911.1 157297..157797(+) (ssb) [Schlegelella aquatica strain LMG 23380]
MASVNKVILIGNLGRDPEVRYTPNGSAVCNISLATTRNWKNRDTGERQEETEWHRVVFYDRLAEIAGEYLKKGRSVYVEG
RLKTRKWQGQDGKDNYTTEIIAEQMQLLGSREGMGGGAAGDEGGYSREPHEGGGAGRSTPAASRPASKPAPKSSTGFDDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=753407 OMP39_RS00715 WP_264892911.1 157297..157797(+) (ssb) [Schlegelella aquatica strain LMG 23380]
ATGGCCTCTGTCAACAAAGTCATCCTGATCGGCAACCTCGGGCGCGACCCCGAGGTGCGCTACACGCCCAACGGTTCGGC
CGTCTGCAACATCTCGTTGGCCACCACCCGCAACTGGAAGAACCGCGACACCGGCGAGCGCCAGGAGGAAACCGAGTGGC
ACCGCGTGGTGTTCTACGACCGCCTGGCCGAGATCGCCGGGGAGTATCTGAAGAAAGGCCGCTCGGTGTACGTCGAGGGG
CGCCTGAAGACCCGCAAGTGGCAAGGCCAGGACGGCAAGGACAACTACACCACCGAGATCATCGCCGAGCAGATGCAACT
GCTGGGCAGCCGCGAGGGCATGGGCGGCGGTGCGGCGGGCGACGAAGGCGGCTACAGCCGCGAGCCCCACGAGGGCGGCG
GTGCGGGCCGCAGCACCCCGGCGGCCTCGCGCCCGGCCAGCAAGCCCGCGCCCAAGTCGTCGACCGGCTTCGACGACATG
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.279

100

0.542
  ssb Glaesserella parasuis strain SC1401

48.889

100

0.53
  ssb Neisseria gonorrhoeae MS11

49.143

100

0.518
  ssb Neisseria meningitidis MC58

48.571

100

0.512
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.057

100

0.367