Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OMP39_RS00770 Genome accession   NZ_CP110257
Coordinates   168182..169696 (-) Length   504 a.a.
NCBI ID   WP_264892922.1    Uniprot ID   -
Organism   Schlegelella aquatica strain LMG 23380     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163182..174696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP39_RS00755 (OMP39_00755) - 164170..165843 (+) 1674 WP_264892919.1 long-chain-fatty-acid--CoA ligase -
  OMP39_RS00760 (OMP39_00760) - 165915..166667 (+) 753 WP_264892920.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  OMP39_RS00765 (OMP39_00765) - 166855..168153 (-) 1299 WP_264892921.1 THUMP domain-containing protein -
  OMP39_RS00770 (OMP39_00770) rpoN/rpoN1 168182..169696 (-) 1515 WP_264892922.1 RNA polymerase factor sigma-54 Machinery gene
  OMP39_RS00775 (OMP39_00775) lptB 169799..170575 (-) 777 WP_264892923.1 LPS export ABC transporter ATP-binding protein -
  OMP39_RS00780 (OMP39_00780) lptA 170572..171147 (-) 576 WP_264892924.1 lipopolysaccharide transport periplasmic protein LptA -
  OMP39_RS00785 (OMP39_00785) - 171218..171865 (-) 648 WP_264892925.1 thiol:disulfide interchange protein DsbA/DsbL -
  OMP39_RS00790 (OMP39_00790) - 171974..172579 (-) 606 WP_264892926.1 SPOR domain-containing protein -
  OMP39_RS00795 (OMP39_00795) argS 172635..174317 (-) 1683 WP_264892927.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55683.25 Da        Isoelectric Point: 4.7355

>NTDB_id=753408 OMP39_RS00770 WP_264892922.1 168182..169696(-) (rpoN/rpoN1) [Schlegelella aquatica strain LMG 23380]
MKPSLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEPEEDPAGEAAPAAAVPERTPASETLAAEAEGG
DGFEAPEAPSMDSVEFGATEREDWENGTERDDFDGIRETPAPRNGAIDDGELDPIDRASPGISLQDHLRQQLMGMRLAPE
DAAAVMVLIESLDEDGYLADPLEEIAARLAGDDAEAREELLERLQCALKWLQSLEPTGVGARNLSECLCLQLQALPRSEA
QVVATLICKHHLETLARRDIKKLMASTGADEETIKQAQSLIVSLEPKPGRPFTRAEAHIVVPDVIVQKAGRQWKVVLNPD
VMPRLRINDLYAQALKQQRAHEGAQALSARLQEARWFMKNIQQRFETIQRVAQAIVERQKNFFTHGEIAMKPLVLREIAD
ELGLHESTISRVTTAKYMATPFGTFELKYFFGSSLNTEAGGNASSTAVRALIKQLVAAEDPKKPLSDSQISEMLGEQGIQ
VARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=753408 OMP39_RS00770 WP_264892922.1 168182..169696(-) (rpoN/rpoN1) [Schlegelella aquatica strain LMG 23380]
ATGAAGCCTTCCCTGCAGGTCCGGCTGTCGCAGCACCTGGCGCTCACGCCCCAGCTGCAGCAGTCGATCCGCCTGCTGCA
ACTCTCCACGCTCGAGCTGCACCAGGAAGTCGAGCAGATGCTGGAGCAGAACCCCTTCCTCGAGCCCGAGGAAGACCCTG
CGGGCGAAGCCGCGCCGGCCGCCGCCGTTCCCGAGCGGACCCCCGCCTCGGAAACCCTCGCGGCCGAGGCCGAGGGCGGC
GACGGCTTCGAGGCCCCGGAAGCGCCGAGCATGGACAGCGTCGAGTTCGGCGCCACCGAGCGCGAGGACTGGGAGAACGG
CACCGAGCGCGATGATTTCGACGGCATCCGCGAAACGCCCGCACCCCGCAACGGGGCGATCGACGACGGCGAGCTCGACC
CGATCGACCGGGCCTCCCCCGGCATCAGTCTGCAAGACCACCTGCGCCAGCAGCTCATGGGGATGCGGCTGGCCCCCGAG
GATGCGGCCGCGGTGATGGTGTTGATCGAGTCGCTCGACGAAGATGGCTACCTCGCCGACCCGCTGGAGGAGATCGCCGC
GCGTCTGGCGGGCGACGACGCCGAGGCGCGCGAGGAGTTGCTCGAGCGGCTGCAATGCGCGCTCAAGTGGCTGCAGAGCC
TGGAGCCCACCGGGGTGGGCGCGCGCAACCTGTCCGAATGCCTGTGTCTGCAATTGCAGGCGCTGCCGCGCAGCGAGGCG
CAGGTGGTGGCGACCCTCATCTGCAAGCACCACCTCGAGACGCTCGCGCGGCGCGACATCAAGAAGCTGATGGCCTCCAC
CGGGGCCGACGAGGAGACGATCAAGCAAGCCCAGAGCCTCATCGTCTCGCTCGAGCCCAAGCCGGGGCGCCCCTTCACGC
GCGCCGAGGCCCACATCGTCGTGCCCGATGTCATCGTGCAGAAGGCCGGGCGGCAATGGAAGGTGGTGCTCAACCCCGAC
GTGATGCCCCGGCTTCGCATCAACGACCTCTACGCCCAGGCGCTCAAGCAGCAGCGCGCCCACGAGGGCGCGCAGGCGTT
GAGCGCGCGGCTGCAGGAGGCGCGCTGGTTCATGAAGAACATCCAGCAGCGGTTCGAGACCATCCAGCGCGTGGCGCAGG
CCATCGTCGAGCGGCAGAAGAACTTCTTCACACACGGCGAGATCGCGATGAAGCCGCTCGTGCTGCGCGAGATCGCCGAC
GAACTCGGGCTGCACGAATCGACCATCTCGCGCGTGACCACCGCCAAGTACATGGCCACGCCCTTCGGCACGTTCGAGCT
CAAGTACTTCTTCGGCTCGTCGCTCAACACCGAGGCGGGAGGCAATGCCTCCAGCACCGCCGTGCGTGCGCTCATCAAGC
AGCTGGTGGCCGCCGAGGACCCGAAGAAGCCGCTGTCGGACAGCCAGATCAGCGAGATGCTCGGCGAGCAGGGCATCCAG
GTGGCGCGCCGCACCGTGGCCAAGTACCGCGAGGCGTTGAAGATCGCGCCCGCCAATTTGCGCAAGGCGTTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(346-502)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.662

100

0.575