Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OKW95_RS18110 Genome accession   NZ_CP110254
Coordinates   3842063..3843481 (+) Length   472 a.a.
NCBI ID   WP_323739778.1    Uniprot ID   -
Organism   Acinetobacter oleivorans strain S4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3837063..3848481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS18090 (OKW95_18095) thrC 3837318..3838457 (+) 1140 WP_004795157.1 threonine synthase -
  OKW95_RS18095 (OKW95_18100) pbpG 3838565..3839611 (-) 1047 WP_147306163.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OKW95_RS18100 (OKW95_18105) - 3839824..3840459 (+) 636 WP_003654436.1 response regulator -
  OKW95_RS18105 (OKW95_18110) pilS 3840470..3842038 (+) 1569 WP_323739777.1 PAS domain-containing sensor histidine kinase Regulator
  OKW95_RS18110 (OKW95_18115) pilR 3842063..3843481 (+) 1419 WP_323739778.1 sigma-54 dependent transcriptional regulator Regulator
  OKW95_RS18115 (OKW95_18120) - 3843484..3844668 (-) 1185 WP_111855731.1 S41 family peptidase -
  OKW95_RS18120 (OKW95_18125) gpmI 3844684..3846231 (-) 1548 WP_323739779.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  OKW95_RS18125 (OKW95_18130) lptG 3846358..3847428 (-) 1071 WP_013199135.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53002.19 Da        Isoelectric Point: 6.1582

>NTDB_id=753401 OKW95_RS18110 WP_323739778.1 3842063..3843481(+) (pilR) [Acinetobacter oleivorans strain S4]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTGETYLLQQDFPGNVRELRNMIERAITLSDDEFIDLTHLAPLLRGSSVNSQITIQPLN
DTSTAIAQTRPKLPMEGLERYLENIEKDLLLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=753401 OKW95_RS18110 WP_323739778.1 3842063..3843481(+) (pilR) [Acinetobacter oleivorans strain S4]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGTT
TAACCGATTTAAACCTACCCGATGGTAGCGGTTTAGAATTGGTTAAACATGTTTCTCAAACTTACCCACACACACCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCGTTAAAGGCAGGAGCTTTTGACTTTGTAAGTAAACC
TATTAACCAAATTCACTTAGATCAGTTATTAAAAAAAGCGCTCAATCAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CTTTGGAAAATGACCTATTAATTGGTCGTTCTCCCCCAATACAAAACTTACGAACAGCTATTAAAAAAATAGCCCGCTCT
CAAGCTCCTGTGTTTGTTACAGGCGAGTCTGGTACAGGTAAAGAGGTTGTTGCTAATCTTATTCACCGCTTGAGTAATCG
CAGCGAAGGCCCGTTTATTGCGATTAACTGTGGAGCCATCCCAACCGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGGAGCTTTACTGGAGCGACTCAAGATAAACAAGGTCTTATTTTATCGGCACACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCATTAAGTATGCAAGTTAAATTGCTTCGGGCCGTGCAAGAGAAAAAAATTCGTCCAGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCCAGCCACCAAGATTTAGATTTGTTAGTCCGACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTGATGGATATCATGTTGCCACCACTACGTGAGCGCGGTGGCGATATTTTGTTA
TTAGCCAATCATTTTATTCAAAAAGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACTACAACTGGTGAAACTTA
TTTATTGCAGCAAGATTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATTTATTGATTTAACACACCTAGCACCTCTTCTTAGAGGCAGTAGTGTTAACTCTCAAATAACCATTCAACCATTGAAT
GACACATCAACTGCGATTGCCCAAACTCGACCAAAACTACCAATGGAAGGTTTAGAACGCTACTTAGAAAATATTGAAAA
AGATCTTCTATTGAACGCATTGGACATGACACATTGGAACCGAACATTAGCAGCTAAAAAACTAGGAATGACCTTTCGTT
CTTTACGCTATCGACTGAAAAAGTTTGGCTTAGATACCGAATTGGGAGAAGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.258

100

0.864
  pilR Pseudomonas aeruginosa PAK

50.649

97.881

0.496