Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OKW95_RS18105 Genome accession   NZ_CP110254
Coordinates   3840470..3842038 (+) Length   522 a.a.
NCBI ID   WP_323739777.1    Uniprot ID   -
Organism   Acinetobacter oleivorans strain S4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3835470..3847038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS18085 (OKW95_18090) - 3835962..3837263 (+) 1302 WP_005301642.1 homoserine dehydrogenase -
  OKW95_RS18090 (OKW95_18095) thrC 3837318..3838457 (+) 1140 WP_004795157.1 threonine synthase -
  OKW95_RS18095 (OKW95_18100) pbpG 3838565..3839611 (-) 1047 WP_147306163.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  OKW95_RS18100 (OKW95_18105) - 3839824..3840459 (+) 636 WP_003654436.1 response regulator -
  OKW95_RS18105 (OKW95_18110) pilS 3840470..3842038 (+) 1569 WP_323739777.1 PAS domain-containing sensor histidine kinase Regulator
  OKW95_RS18110 (OKW95_18115) pilR 3842063..3843481 (+) 1419 WP_323739778.1 sigma-54 dependent transcriptional regulator Regulator
  OKW95_RS18115 (OKW95_18120) - 3843484..3844668 (-) 1185 WP_111855731.1 S41 family peptidase -
  OKW95_RS18120 (OKW95_18125) gpmI 3844684..3846231 (-) 1548 WP_323739779.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59098.63 Da        Isoelectric Point: 6.3667

>NTDB_id=753400 OKW95_RS18105 WP_323739777.1 3840470..3842038(+) (pilS) [Acinetobacter oleivorans strain S4]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSILSLLQLLCFKFVATQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRRMISKQTKRIDSIVQDTLGLANSERTYPIQIELNNFIKTLLDEDLLDVK
HSIQLKISDSSLKLLFDEKQLRQVLINLVRNALRHNAPDSPHVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=753400 OKW95_RS18105 WP_323739777.1 3840470..3842038(+) (pilS) [Acinetobacter oleivorans strain S4]
ATGCAATTTCCCTTAAACTCATCGTTGTCCCATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCGCTTTATATTCTT
ATACCCTGCTCGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTGTTGCAACTCAGGCAACCAAGCAG
CTTATTTTATTTTTTGTAGTTGATGTTATCTGCCTGAGTTTACTTACATTTTCTGTAGGCGAACCAAATCTACAACTCAG
CTTGTTGTATGTTATTGCTATATTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCAG
TCATTGCCGTTATTTACCAGCGTTTTGTCGGTAGTTTGTTTGACTACAATAATCTAAATACGATTGGTAATAGTGCTTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGCATCGGGCAAATTGCGGTACAGCGCTTTAAACTACTTGAAGCACTGACTTT
CCATCAATCCATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAAGGCTATTTGGTTC
TAGATGAAAACTACGACATTGTTCTAAGTAATCCAGCTGCCTGCTCGCTGTTAGGGATTCCTCCTCAATTTGCTAGTGAA
AAATACCCTTTAGCGAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGATAACCTACAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGGCTATCGGCATATTCTATTAATATTAAAGTGCAACACCTTGTTGTGCCGCAACAAGCATTGACGCTAC
TCATATTACAAGATGCACAGCAAATCAATCAGCAAGCTCAACAACTCAAACTTGCTGCCTTAGGACAACTTTCAGCCAGC
ATTGCACACGAAATCCGTAATCCCTTAGCAGCCATTGTTCAGGCAAATGAATTACTTAAAGATAGTGATTCAGAACAGCA
AAATACTTTACGCCGTATGATTAGTAAGCAAACAAAACGCATCGATAGTATTGTTCAAGACACATTAGGACTGGCTAACA
GCGAAAGAACTTACCCAATTCAGATTGAATTAAACAACTTCATAAAGACATTATTAGACGAAGATCTATTAGATGTTAAA
CATTCTATACAGCTTAAAATTTCCGATTCATCCTTAAAATTATTATTTGACGAGAAACAACTTAGGCAGGTGCTCATTAA
CCTTGTCAGAAATGCTTTGCGACATAATGCACCCGATTCACCCCATGTTCTGATCAACATTCACTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGGGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-255)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.487

100

0.935