Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OKW95_RS01585 Genome accession   NZ_CP110254
Coordinates   338847..339374 (+) Length   175 a.a.
NCBI ID   WP_005300971.1    Uniprot ID   A0AAJ1PDF5
Organism   Acinetobacter oleivorans strain S4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333847..344374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS01570 (OKW95_01570) comM 336391..337449 (+) 1059 WP_005300961.1 pilus assembly protein PilM Machinery gene
  OKW95_RS01575 (OKW95_01575) pilN 337449..338090 (+) 642 WP_005300964.1 PilN domain-containing protein Machinery gene
  OKW95_RS01580 (OKW95_01580) pilO 338087..338836 (+) 750 WP_005300968.1 type 4a pilus biogenesis protein PilO Machinery gene
  OKW95_RS01585 (OKW95_01585) pilP 338847..339374 (+) 528 WP_005300971.1 pilus assembly protein PilP Machinery gene
  OKW95_RS01590 (OKW95_01590) pilQ 339438..341603 (+) 2166 WP_323739876.1 type IV pilus secretin PilQ family protein Machinery gene
  OKW95_RS01595 (OKW95_01595) aroK 341615..342184 (+) 570 WP_004789808.1 shikimate kinase AroK -
  OKW95_RS01600 (OKW95_01600) aroB 342213..343295 (+) 1083 WP_323739877.1 3-dehydroquinate synthase -
  OKW95_RS01605 (OKW95_01605) - 343312..344190 (+) 879 WP_005300981.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19281.33 Da        Isoelectric Point: 9.0272

>NTDB_id=753370 OKW95_RS01585 WP_005300971.1 338847..339374(+) (pilP) [Acinetobacter oleivorans strain S4]
MKLKQISFSILACLVLVGCDSRIDAVNQQMANIRNQPPQPIDPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKQ
VYPNFSRAPQPLESYALESLNMKGSIRNNRGQVLALIQSPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=753370 OKW95_RS01585 WP_005300971.1 338847..339374(+) (pilP) [Acinetobacter oleivorans strain S4]
ATGAAACTTAAACAAATTTCTTTTTCTATTTTGGCATGTTTGGTTTTAGTTGGATGTGATTCTAGAATCGATGCTGTAAA
TCAGCAAATGGCAAATATACGTAATCAGCCACCACAACCGATAGATCCAGCACCTGTTTTTACGCCTGTGCCACAATTTA
ACTATGCGGCTCATCAGCTAAAGAGTCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCAGGAAAACAG
GTATATCCGAATTTCTCACGTGCACCTCAGCCTCTAGAAAGTTATGCATTAGAATCCTTAAACATGAAAGGAAGCATACG
TAATAACCGTGGGCAAGTATTGGCTCTTATCCAATCACCCGATCAGCAAATTGAACGGGTACAGGTGGGGAACTATATCG
GGATGAACCAAGGGCGTATTACTCATATTGGTCCAACCCAGATTGATCTGGTAGAGATTGTCCCTGATGGGCGCGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

89.714

100

0.897
  comL Acinetobacter baylyi ADP1

70.76

97.714

0.691