Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OKW95_RS01575 Genome accession   NZ_CP110254
Coordinates   337449..338090 (+) Length   213 a.a.
NCBI ID   WP_005300964.1    Uniprot ID   A0AAJ1PFG2
Organism   Acinetobacter oleivorans strain S4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332449..343090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS01560 (OKW95_01560) - 332749..333573 (+) 825 WP_323739874.1 putative RNA methyltransferase -
  OKW95_RS01565 (OKW95_01565) ponA 333668..336229 (-) 2562 WP_323739875.1 penicillin-binding protein PBP1a -
  OKW95_RS01570 (OKW95_01570) comM 336391..337449 (+) 1059 WP_005300961.1 pilus assembly protein PilM Machinery gene
  OKW95_RS01575 (OKW95_01575) pilN 337449..338090 (+) 642 WP_005300964.1 PilN domain-containing protein Machinery gene
  OKW95_RS01580 (OKW95_01580) pilO 338087..338836 (+) 750 WP_005300968.1 type 4a pilus biogenesis protein PilO Machinery gene
  OKW95_RS01585 (OKW95_01585) pilP 338847..339374 (+) 528 WP_005300971.1 pilus assembly protein PilP Machinery gene
  OKW95_RS01590 (OKW95_01590) pilQ 339438..341603 (+) 2166 WP_323739876.1 type IV pilus secretin PilQ family protein Machinery gene
  OKW95_RS01595 (OKW95_01595) aroK 341615..342184 (+) 570 WP_004789808.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23816.09 Da        Isoelectric Point: 5.4112

>NTDB_id=753368 OKW95_RS01575 WP_005300964.1 337449..338090(+) (pilN) [Acinetobacter oleivorans strain S4]
MATINLLPWRDGLREQRKKQFIIFCFGVVVLGITTVSSGWFYLNQKLDDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEMGGTTTDDTANTSVSADKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=753368 OKW95_RS01575 WP_005300964.1 337449..338090(+) (pilN) [Acinetobacter oleivorans strain S4]
ATGGCAACAATTAATTTACTTCCTTGGCGTGATGGGCTTAGGGAACAGCGCAAAAAACAATTTATTATTTTCTGTTTTGG
GGTCGTTGTGCTGGGGATTACCACTGTATCTTCTGGGTGGTTTTATTTAAATCAAAAATTAGATGATCAAGAACAAGCTA
ATCAACTCATTACTAGTACAAACCAGAGTCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGATGCC
ATTATCGAACGTATGAAACTTATTCAGGGGTTGCAAAGTCAACGTCCTGTTGTTGTGCGTTTGGTGGATGAATTGGTACG
GGTGACTCCGGCAGCGATGTATTTGACTAAATTTAGCAGAACTGGAGATAAATTTACCATTGAAGGTAAAGCAGAAAGTC
CAAATACGGTCGCGGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAATGCTTTTATGAACTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGACGGCGAGTTCACTGCTTCCTAGAGTAGAAGATAGTTATGGCAGTTTTGTTGTGACTGT
TGATTTAGGAGAAATGGGGGGGACTACAACAGATGATACCGCGAATACGTCTGTAAGTGCGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704