Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   UKS_RS01390 Genome accession   NZ_AP021887
Coordinates   267532..269481 (+) Length   649 a.a.
NCBI ID   WP_156011456.1    Uniprot ID   A0A6H3SIR5
Organism   Streptococcus sp. 116-D4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 269505..270853 267532..269481 flank 24


Gene organization within MGE regions


Location: 267532..270853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS01390 (UKS_02460) amiA 267532..269481 (+) 1950 WP_156011456.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 649 a.a.        Molecular weight: 72620.60 Da        Isoelectric Point: 4.6797

>NTDB_id=75331 UKS_RS01390 WP_156011456.1 267532..269481(+) (amiA) [Streptococcus sp. 116-D4]
MKKSKVMLFGAVALTAGLALAACGSSQSSNADKTYSYIFVSNPDTLDYITSTRDSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKSSDFETVGV
KAVDDYTLQYTLNQPETYWNSKTTASILNPVNEAFLKSKGEDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQT
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTITPSNFVQVGDKNFGDIVNEKIVNYGKDWANINL
NDGKQAFFNPEKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKDNVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDPETGSQLKNMGLSEGKDKEVKDKIGLSDYKKLLDQADAEITDTQA
RYEKYADAQAWLTDSALFLPVQSGGANPIFRKTVPFTGPFSFVGNKGNADNYKYVELQKEPVTAKQYQELYEKWQKEKAE
SNKKAQEVY

Nucleotide


Download         Length: 1950 bp        

>NTDB_id=75331 UKS_RS01390 WP_156011456.1 267532..269481(+) (amiA) [Streptococcus sp. 116-D4]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTGTAGCTTTGACAGCAGGTTTAGCACTAGCAGCATGTGGGTCTTCCCA
ATCAAGTAATGCAGACAAGACTTACTCTTATATCTTTGTCAGCAACCCAGATACCTTGGATTATATTACCTCTACACGAG
ATTCTACATCTAGTATCACAACCAACTTGATTGATGGGTTGTTGGAAAATGATCAGTACGGCAATCTCATCCCCTCTATG
GCTGAGTCATGGACGGTGTCAAAAGATGGTTTGACCTACACCTATAAAATCCGTCAGGGGGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCGGATGTGACAGCCCATGACTTTGTGACGGGTCTTAAGTATGCGGCTGATAAAAAGGCTGAAAATT
TGTATTTGGTACAAGACTCTATCAAAGGGCTAGCAGATTATGTTGAAGGGAAATCTTCTGATTTTGAAACTGTTGGCGTT
AAGGCAGTGGATGATTATACGCTACAATACACCCTCAACCAACCCGAGACTTATTGGAACTCTAAAACAACAGCAAGTAT
CCTTAATCCTGTAAATGAAGCCTTCTTGAAGTCTAAGGGAGAGGACTTTGGAAGTGTGACACCATCAAGTATCTTGTCAA
ATGGTCCTTACTTATTTAAATCTTTCTCATCAAAATCTTTGATTGAATTTGATAAAAATCCTAATTACTGGGATAAGGAC
AATGTCAAAATTGAGAAAGTGAAGCTCTCTTTCTTTGACGGTTCTGACCAAGACAGCATTGCTAGAGGTTTCTTGGATGG
TAACTATACAGATGGTCGTATTTTCCCAACAAGTTCAGTCTTTGCTGAACTCAAGAAGGGAAATGAGGACAAGATTACCT
ATACACCGCAAAACTCAGTTACTTTCTACTATCTTTTCAACGTCAACCGCCAAAGCTACAAGCAAACTATGAAACAGACG
GATAAGGAAAAGACAGATTCACGCGCAGCTATGCAAAATAAAGATTTCCGTCAGGCTATCAATTTTGCCTTTGACCGTCA
TGCCTATGCGGCGCAGACGAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAATACGATTACACCAAGTAACTTTGTTC
AAGTTGGCGATAAGAACTTCGGTGACATTGTCAATGAGAAAATTGTCAACTACGGTAAAGATTGGGCAAATATCAATCTA
AACGATGGTAAGCAAGCCTTCTTTAACCCTGAAAAGGCCAAAGAGAAGTTTGCTAAGGCCAAAGAAAGTCTGCAAGCACA
GGGAGTAACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCTAAGTTGGATGTGCAACAAGCTGGATCTTTCA
AACAAACAGTGGAAGAAACCCTTGGTAAGGATAATGTAGTCATTGATGTTATCCAACTTTCTCCAGATGAAAAAGACCAA
GCAACCTACTTTGCAGATACAGCAGAACAAAAAGACTACGATATTGACATCTCAGGATGGGGTGGAGACTACTCAGATCC
GAAGACTTACCTAGCCATTCTAGATCCAGAGACAGGTTCTCAGTTGAAAAACATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTTAAGGACAAGATTGGTCTTTCTGACTACAAGAAACTCTTGGATCAGGCAGACGCTGAAATCACAGATACTCAAGCT
CGCTATGAAAAATATGCTGACGCTCAAGCCTGGTTGACAGATAGTGCCTTGTTCCTGCCAGTTCAAAGTGGTGGAGCTAA
TCCAATCTTCCGTAAGACTGTACCGTTTACAGGCCCATTCTCATTCGTTGGGAATAAAGGAAATGCGGACAACTACAAAT
ATGTTGAATTGCAAAAAGAGCCAGTGACTGCTAAACAGTATCAAGAACTTTATGAAAAATGGCAAAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGTGTACTGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H3SIR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.607

100

0.558
  amiA3 Streptococcus thermophilus LMD-9

55.146

100

0.553
  amiA3 Streptococcus thermophilus LMG 18311

54.839

100

0.55

Multiple sequence alignment