Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OLL86_RS09210 Genome accession   NZ_CP110225
Coordinates   1963157..1964359 (-) Length   400 a.a.
NCBI ID   WP_264779897.1    Uniprot ID   -
Organism   Gallibacterium anatis strain IMT49310     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1958157..1969359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS09210 (OLL86_09210) dprA 1963157..1964359 (-) 1203 WP_264779897.1 DNA-processing protein DprA Machinery gene
  OLL86_RS09215 (OLL86_09215) def 1964560..1965075 (+) 516 WP_018345499.1 peptide deformylase -
  OLL86_RS09220 (OLL86_09220) narQ 1965121..1966824 (-) 1704 WP_264779898.1 nitrate/nitrite two-component system sensor histidine kinase NarQ -
  OLL86_RS09225 (OLL86_09225) napF 1967050..1967559 (+) 510 WP_018345501.1 ferredoxin-type protein NapF -
  OLL86_RS09230 (OLL86_09230) - 1967563..1967838 (+) 276 WP_013746041.1 chaperone NapD -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 43406.74 Da        Isoelectric Point: 6.8808

>NTDB_id=753198 OLL86_RS09210 WP_264779897.1 1963157..1964359(-) (dprA) [Gallibacterium anatis strain IMT49310]
MQTVTTLLRLALLPQFGAIKIQQLLEQISLDTLLSYDRQTLSQIGWNAAQIQAWFSPPQAIIDTVLNWQQQAGNHILHYF
DHSYPLLLKQTRSAPPLLFVKGNIDVLSSPQIAMVGSRYCSPYGEHYAQTIAGELAHSGITINSGLALGIDGICHRAALD
NHGKTVAVLGSGLDQLYPARHKKLAQQILENNGALLSELFPDTPPIAENFPRRNRIISGLSFGTIVIEASQKSGSLITAR
LALEQNREVFAVPGALDNPLSQGCHHLIKQGAWLIENAQDVLEILTPQISSLMPFTPAIAAQTPTPTGNRSTAQNTIAIS
PQAKSGYTPPTINKKATIKLDIPSQHQALMQQLNSATAISPDELSTALNRPIDQILTDLLELEMLGAVQQIQGGYIKNIG

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=753198 OLL86_RS09210 WP_264779897.1 1963157..1964359(-) (dprA) [Gallibacterium anatis strain IMT49310]
ATGCAAACAGTAACCACACTTTTACGTTTAGCCCTGCTGCCGCAATTCGGTGCTATCAAAATTCAACAACTGCTTGAACA
AATCTCGCTAGATACGCTGCTCAGCTACGATCGGCAAACACTCAGCCAAATCGGTTGGAACGCTGCGCAAATTCAGGCTT
GGTTTTCACCGCCGCAAGCGATTATCGACACCGTTCTGAATTGGCAACAACAGGCAGGCAACCATATTCTGCACTATTTT
GATCACAGTTACCCGCTGTTGTTGAAACAAACTCGCTCCGCACCACCACTGCTGTTTGTAAAAGGTAACATTGATGTGCT
CTCTTCGCCACAAATCGCTATGGTAGGCAGTCGCTATTGTTCACCTTATGGCGAACATTACGCCCAAACCATCGCCGGCG
AACTGGCACATAGCGGCATCACCATTAACAGCGGTTTAGCCTTAGGCATTGATGGCATTTGTCATCGTGCCGCTTTGGAT
AATCACGGCAAAACCGTTGCTGTTTTGGGCAGCGGCTTGGATCAACTTTATCCGGCTCGCCACAAAAAATTGGCACAACA
GATTCTAGAAAACAACGGTGCATTGCTGTCGGAGCTGTTTCCCGACACGCCGCCCATTGCCGAAAATTTTCCACGCCGAA
ACCGTATTATCAGCGGTCTCTCGTTCGGCACCATCGTCATCGAAGCCTCGCAAAAAAGTGGTTCATTAATTACTGCACGT
CTGGCATTGGAACAAAATCGCGAAGTATTCGCCGTTCCAGGTGCATTGGACAATCCATTGAGTCAAGGTTGCCATCACTT
AATCAAACAAGGGGCGTGGTTAATTGAAAATGCACAGGATGTGTTGGAAATTCTAACACCGCAAATTTCATCATTAATGC
CGTTTACACCAGCAATAGCAGCGCAAACACCAACGCCAACCGGCAATCGCTCTACTGCACAGAACACGATCGCAATATCG
CCACAAGCAAAATCCGGTTACACGCCACCGACCATCAACAAAAAAGCGACAATCAAACTTGATATTCCGTCACAACATCA
AGCATTAATGCAACAATTAAACAGTGCAACCGCGATTTCACCGGATGAACTTTCGACCGCATTAAATCGCCCTATCGATC
AAATTCTGACTGATCTATTGGAACTGGAAATGCTCGGCGCAGTACAACAAATTCAAGGCGGTTATATTAAAAATATCGGC
TGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-276)

DprA winged helix domain (DprA_WH)

(344-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

48.99

99

0.485
  dprA Haemophilus influenzae Rd KW20

60.49

71.5

0.433
  dprA Vibrio campbellii strain DS40M4

43.878

98

0.43
  dprA Legionella pneumophila strain ERS1305867

38.308

100

0.385