Detailed information NTG0753198

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P4N66_RS07335
• Genome accession: NZ_CP123953
• Coordinates: 1518278..1519282 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 59
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1513278..1524282

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P4N66_RS07305 (P4N66_gene1455)	fghA	1513370..1514221 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
P4N66_RS07310 (P4N66_gene1456)	ispF	1514292..1514765 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P4N66_RS07315 (P4N66_gene1457)	truD	1514762..1515829 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
P4N66_RS07320 (P4N66_gene1458)	surE	1515817..1516566 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
P4N66_RS07325 (P4N66_gene1459)	-	1516599..1517234 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P4N66_RS07330 (P4N66_gene1460)	-	1517280..1518173 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
P4N66_RS07335 (P4N66_gene1461)	rpoS	1518278..1519282 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
P4N66_RS07340 (P4N66_gene1462)	fdxA	1519709..1520032 (-)	324	WP_003119354.1	ferredoxin FdxA	-
P4N66_RS07345 (P4N66_gene1463)	mutS	1520099..1522666 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
P4N66_RS07350 (P4N66_gene1464)	-	1522792..1523799 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=753198 P4N66_RS07335 WP_003113871.1 1518278..1519282(+) (rpoS) [Pseudomonas aeruginosa strain 59]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=753198 P4N66_RS07335 WP_003113871.1 1518278..1519282(+) (rpoS) [Pseudomonas aeruginosa strain 59]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653