Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QHG49_RS23870 Genome accession   NZ_CP123923
Coordinates   5416611..5417726 (+) Length   371 a.a.
NCBI ID   WP_236576274.1    Uniprot ID   -
Organism   Streptomyces sp. WP-1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5411611..5422726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG49_RS23855 (QHG49_23860) - 5411893..5413182 (+) 1290 WP_301491202.1 deoxyguanosinetriphosphate triphosphohydrolase -
  QHG49_RS23860 (QHG49_23865) - 5413287..5414552 (+) 1266 WP_301491204.1 NAD(P)/FAD-dependent oxidoreductase -
  QHG49_RS23865 (QHG49_23870) dnaG 5414599..5416506 (+) 1908 WP_145488334.1 DNA primase -
  QHG49_RS23870 (QHG49_23875) rpoS 5416611..5417726 (+) 1116 WP_236576274.1 RNA polymerase sigma factor Regulator
  QHG49_RS23875 (QHG49_23880) rcrQ 5417790..5419718 (-) 1929 WP_145488335.1 ABC transporter ATP-binding protein Regulator
  QHG49_RS23880 (QHG49_23885) rcrP 5419718..5421451 (-) 1734 WP_159701162.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41030.71 Da        Isoelectric Point: 5.1334

>NTDB_id=753085 QHG49_RS23870 WP_236576274.1 5416611..5417726(+) (rpoS) [Streptomyces sp. WP-1]
MPSPAYILEVALVQTQTLTPTAQSTGAGVDETDAEPDGGAAVPPQGRAPLHPEAAAEEAPAAARTESAGPSADLFRQYLR
EIGRIPLLTAAEEVELARRVEAGLFAEEKLSNTPDLDGELAHDLDRLVVMGRVAKRRLIEANLRLVVSVAKRYVGRGLTM
LDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPE
EVAAHLDLPPERVGEVLRLAQEPISLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLKQHLDAVLSTLGERERKVVQL
RYGLLDGRPRTLEEIGRLFGVTRERIRQIESKTLNKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=753085 QHG49_RS23870 WP_236576274.1 5416611..5417726(+) (rpoS) [Streptomyces sp. WP-1]
ATGCCGAGTCCGGCGTACATCCTGGAGGTCGCCCTCGTGCAGACCCAGACCCTCACCCCTACCGCCCAGAGCACCGGTGC
CGGCGTGGACGAGACGGACGCGGAGCCCGACGGCGGCGCGGCCGTGCCGCCGCAGGGGCGTGCCCCCCTGCATCCGGAGG
CGGCCGCCGAGGAGGCACCGGCCGCGGCGCGCACCGAGAGCGCCGGGCCGTCCGCCGACCTGTTCCGGCAGTACCTGCGC
GAGATCGGCCGCATCCCGCTGCTCACCGCCGCCGAGGAGGTCGAGCTGGCCCGCCGGGTCGAGGCCGGGCTGTTCGCGGA
GGAGAAGTTGAGCAACACCCCTGATCTCGACGGCGAGTTGGCGCACGACCTGGACCGGCTCGTGGTGATGGGGAGGGTGG
CCAAGAGAAGGCTGATCGAGGCCAACCTGCGGCTCGTCGTCTCCGTCGCCAAGCGGTACGTCGGGCGCGGCCTCACCATG
CTCGACCTCGTCCAGGAGGGCAACCTCGGGCTGATCCGCGCCGTGGAGAAGTTCGACTACGCGCGCGGCTACAAGTTCTC
CACGTACGCCACCTGGTGGATCCGGCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGCACCATCCGCGTCCCGGTGC
ACGTCGTGGAGCTGATCAACCGCGTCGTCCGCGTACAGCGCCGCATGCTCCAGGAACGTGGGTACGAGCCGACCCCCGAG
GAGGTCGCCGCCCATCTCGACCTCCCGCCCGAGCGGGTCGGCGAGGTGCTGCGGCTCGCCCAGGAACCCATCTCGCTGCA
CGCCCCCGTCGGCGAGGAGGACGATGTGGCGCTCGGCGACCTCATCGAGGACGGCGACGCCGCGAGCCCCGTGGAGTCCG
CCGCCTTCCTGCTGCTCAAGCAGCACCTGGACGCCGTGCTGTCCACGCTGGGCGAGCGCGAGCGCAAGGTCGTACAACTG
CGCTACGGCCTCCTCGACGGCCGCCCCCGCACCCTGGAGGAGATCGGCCGCCTCTTCGGCGTCACCCGCGAACGGATCCG
CCAGATCGAGTCCAAGACGCTGAACAAGCTCCGGGACCACGCGTACGCGGACCAGCTGAGGGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(306-358)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(73-106)

Sigma-70 region 2 (Sigma70_r2)

(138-207)

Sigma-70 region 3 (Sigma70_r3)

(217-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.228

92.183

0.38