Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QHG49_RS23875 Genome accession   NZ_CP123923
Coordinates   5417790..5419718 (-) Length   642 a.a.
NCBI ID   WP_145488335.1    Uniprot ID   -
Organism   Streptomyces sp. WP-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5412790..5424718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG49_RS23860 (QHG49_23865) - 5413287..5414552 (+) 1266 WP_301491204.1 NAD(P)/FAD-dependent oxidoreductase -
  QHG49_RS23865 (QHG49_23870) dnaG 5414599..5416506 (+) 1908 WP_145488334.1 DNA primase -
  QHG49_RS23870 (QHG49_23875) rpoS 5416611..5417726 (+) 1116 WP_236576274.1 RNA polymerase sigma factor Regulator
  QHG49_RS23875 (QHG49_23880) rcrQ 5417790..5419718 (-) 1929 WP_145488335.1 ABC transporter ATP-binding protein Regulator
  QHG49_RS23880 (QHG49_23885) rcrP 5419718..5421451 (-) 1734 WP_159701162.1 ABC transporter ATP-binding protein Regulator
  QHG49_RS23885 (QHG49_23890) - 5421616..5423064 (-) 1449 WP_301491206.1 FGGY-family carbohydrate kinase -
  QHG49_RS23890 (QHG49_23895) - 5423092..5423397 (-) 306 WP_145488340.1 YtxH domain-containing protein -
  QHG49_RS23910 (QHG49_23915) - 5424552..5424689 (+) 138 WP_301491207.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69687.24 Da        Isoelectric Point: 6.9884

>NTDB_id=753086 QHG49_RS23875 WP_145488335.1 5417790..5419718(-) (rcrQ) [Streptomyces sp. WP-1]
MSGPMGRMMAGGGPDQRSMDFKGSGRRLLGQFRPERLTVYGLLVCVVVSVALSVIGPKILGRATDLVFSGIIGRQLPAGT
TKAQVLAQMRAHGKGAVADMLQSTDFTPGKGIDFGAVGDVLLLALVTFLVAGLLMAVATRLVNRSVNRTMYRLRESVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIVGVLAMMFWVSWILALVALVTVPLSFFVATRVGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQEESAKQFAEQNEALYEAAFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADPVPGERPAELRGRVRLE
HVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDVRRMTRDELRSGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKGMAKLAAGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=753086 QHG49_RS23875 WP_145488335.1 5417790..5419718(-) (rcrQ) [Streptomyces sp. WP-1]
ATGTCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGGGGTCGGGCAGACG
ACTGCTCGGCCAGTTCAGGCCCGAACGGCTGACCGTGTACGGCCTGCTGGTCTGCGTGGTGGTCAGCGTGGCCCTCAGCG
TGATCGGCCCGAAGATCCTCGGCCGCGCCACCGACCTGGTCTTCTCCGGCATCATCGGCCGGCAGCTGCCCGCCGGGACC
ACCAAGGCGCAGGTGCTGGCGCAGATGCGGGCGCACGGCAAGGGCGCCGTCGCGGACATGCTCCAGAGCACCGACTTCAC
CCCGGGCAAGGGCATCGACTTCGGCGCGGTCGGCGACGTACTGCTGCTCGCGCTCGTCACCTTCCTGGTCGCCGGGCTGC
TGATGGCGGTGGCGACACGGCTGGTCAACCGGTCGGTGAACCGCACGATGTACCGGCTGCGCGAGTCCGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTCTCGCGGGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGGTGCTGACCATCGTCGGTGTGCTGGCGATGATGT
TCTGGGTCTCCTGGATCCTCGCGCTGGTCGCGCTGGTCACGGTGCCGCTGTCGTTCTTCGTCGCCACCCGGGTCGGCAAG
CGTTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACGGGCAAGCTCAACGCCCATGTGGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCTGAGCAGAACGAGGCTCTGTACGAGGCCG
CGTTCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTGGCGTCCGGCGCGCTGTCCATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCCATGCCGCTGACGCAGGTGGCCTCCATGGCGAACCTGGTGCAGTCCGGGGTGGCCTCGGCGGAGCGGGTCTTCGAAC
TCCTCGACGCCGAGGAGCAGGAGGCGGACCCGGTGCCGGGCGAGCGGCCCGCGGAGCTGCGCGGGCGGGTGCGTCTTGAG
CATGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGATCTCTCGCTCACGGTGGAGCCCGGTCACACGGTGGC
CATCGTCGGCCCCACGGGCGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGACGTCTCCGGCGGGCGGA
TCACCCTGGACGGGGTGGACGTACGGAGGATGACCCGGGACGAACTGCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCCTCGCGGGAGGTCACCCGGGGCGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCGGACCGGTTCATCCGGACGCTGCCCGAGGGTTACGACACCGTGATCGACGACGAGGGCTCGG
GGGTGAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTGGACGAG
GCGACGAGTTCCGTGGACACGCGGACCGAGGTGCTGATCCAGAAGGGCATGGCCAAACTCGCCGCCGGACGTACGTCGTT
CGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCACACCGAGCTGTTGGCGGCGGACGGCGCGTACGCCCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(43-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388