Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   OFY13_RS04960 Genome accession   NZ_CP110188
Coordinates   1058913..1061156 (+) Length   747 a.a.
NCBI ID   WP_000173772.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1053913..1066156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS04935 (OFY13_04935) - 1054376..1054951 (-) 576 WP_000999604.1 PilZ domain-containing protein -
  OFY13_RS04940 (OFY13_04940) lolC 1055127..1056335 (+) 1209 WP_000468894.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  OFY13_RS04945 (OFY13_04945) lolD 1056328..1057014 (+) 687 WP_001061282.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OFY13_RS04950 (OFY13_04950) lolE 1057015..1058259 (+) 1245 WP_000493015.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  OFY13_RS04955 (OFY13_04955) - 1058374..1058904 (-) 531 WP_001881633.1 DUF2062 domain-containing protein -
  OFY13_RS04960 (OFY13_04960) comEC 1058913..1061156 (+) 2244 WP_000173772.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OFY13_RS04965 (OFY13_04965) msbA 1061187..1062935 (+) 1749 WP_000052155.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  OFY13_RS04970 (OFY13_04970) lpxK 1062938..1063945 (+) 1008 WP_032481777.1 tetraacyldisaccharide 4'-kinase -
  OFY13_RS04975 (OFY13_04975) - 1063926..1064105 (+) 180 WP_000350068.1 Trm112 family protein -
  OFY13_RS04980 (OFY13_04980) kdsB 1064105..1064863 (+) 759 WP_000011327.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84417.64 Da        Isoelectric Point: 7.9707

>NTDB_id=752941 OFY13_RS04960 WP_000173772.1 1058913..1061156(+) (comEC) [Vibrio cholerae strain E1]
MTLLSNYWSLISFSITVLSAPYWPWMPSWGWAWLCLIVMVLLGYHRAGRQFLGFVAAILTIVLQGNLIRDQSNVLYQAGP
DIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYM
AQSVVARAVVKPDTAYQIVQESGIRSSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAISGLHI
GIAFSVGYFLGLGMMRLHAQLLWSPFVCGALLAVLYAWLAGFTLPTQRALIMCLLNVALIMLAFPLSALKRILLTLVAVL
LWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVWWKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVI
VPALFLGLLLMVVWPSVAAAYWPWVDWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLLGMMG
LWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDTGSSWPGGSYVQSVIEPILQQRGLRQVDGVILSHLDNDHAGDW
QGLAERWQPNWIRASQLGAEFMPCIRGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTQSKHSVLLSGDVTAMGEW
LLARDGAQLQSEVMIVPHHGSKTSSTAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQISLFFY
PDQLDWFTQRSLGWQPWYRQMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=752941 OFY13_RS04960 WP_000173772.1 1058913..1061156(+) (comEC) [Vibrio cholerae strain E1]
ATGACTCTCTTGTCGAATTATTGGTCTCTCATTTCTTTTTCGATCACCGTGCTGTCTGCCCCTTATTGGCCTTGGATGCC
GAGTTGGGGCTGGGCTTGGTTATGCCTTATTGTTATGGTTTTGCTCGGTTATCACCGAGCTGGCCGTCAATTCCTTGGCT
TCGTGGCTGCCATACTAACCATTGTGCTACAGGGCAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAGGGCCG
GATATTATCATAAAAGGCCGTGTTGACAGCTTTTTTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATTCATGA
AGTGAATGGACAAACCTTAAACAAAATGACTCGCCCTCGCATACGTTTAAGTGCCCCTTTACTGTTACAACCCAATGACC
GCGTCGAATTTTCGGTAACTCTCAAGCCGATAGTGGGTCGACTCAACCAAACCGGCTTTGATTTAGAAGCGCATTACATG
GCGCAATCTGTCGTCGCACGGGCGGTCGTAAAACCTGACACCGCTTATCAAATTGTGCAAGAGAGTGGCATAAGGTCAAG
TTTGTTTTTTGAGCTGGAACAATTAACGCATACCAGCCCATACCAAGGATTGATCTTAGCCCTGACGTTTGGCGAGCGAA
AAGGTATTGATGAGCAAGAGTGGCAAGCCTTACGCAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGCACATT
GGTATCGCTTTTAGCGTGGGTTATTTTCTCGGGCTCGGCATGATGCGTCTTCATGCTCAGTTATTGTGGTCCCCTTTTGT
GTGTGGGGCTTTACTGGCGGTGCTCTACGCTTGGCTGGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATCATGTGCT
TACTCAATGTGGCGTTGATCATGTTGGCTTTTCCTCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGTCGCGGTCTTG
CTTTGGTCGCCATTCGCCTCACTTTCAAACAGTTTCTGGATGTCGTTTTTGGCGGTCGCGATTGTTCTCTACCAATTAGC
CAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCTCTGCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCACCGGTCA
CGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGCAGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGGTGATT
GTACCAGCTTTGTTTTTGGGCCTATTACTCATGGTGGTATGGCCTAGTGTGGCCGCCGCTTACTGGCCTTGGGTGGATTG
GACGTTTTTACCGCTCGATTGGGCTTTGCAGTTTGCCGATGTAGGCTGGTGGGTGGTACCCAGCAAAGTACAAGGTGTAG
TCGCAGCGAGTGTGGCCATCCTCTTGCTTTATCGATTTATGAGCCTAAAAGCCTGCAGCTTATTATTGGGTATGATGGGC
TTATGGTGGTGGTTTCCCTCCCTCACTCCACTTTGGCGAATGGACGTGCTGGATGTTGGACATGGCTTGGCGATTGTGAT
TGAGCAAGATGAGCGAGCAATTGTCTACGATACAGGCAGCAGTTGGCCGGGAGGCAGTTATGTGCAAAGCGTGATTGAGC
CTATTCTCCAACAGCGAGGGCTACGCCAAGTCGATGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTGATTGG
CAAGGTTTAGCTGAGCGCTGGCAACCCAATTGGATTCGTGCCAGCCAACTCGGGGCAGAGTTTATGCCTTGTATCCGTGG
TGAAAGCTGGCAGTGGCAATCTCTCCATTTTACGGTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCAGCATT
CGTGTGTGATTCGTATGACTGATACTCAGTCTAAGCATTCTGTACTGCTCTCCGGGGATGTCACAGCCATGGGGGAGTGG
CTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTGAGGTGATGATCGTGCCGCACCACGGCAGTAAAACATCGTCCACCGC
AGAGTTTATTGCCCAAGTGAATCCCAAACTTGCGATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCTAATCCGC
AAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGAGTGGCTAGATACTGGACACGCTGGGCAAATTAGCCTCTTTTTCTAT
CCAGATCAGCTGGATTGGTTTACCCAGCGTAGCCTTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-173)

Competence protein (Competence)

(208-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

99.063

100

0.991
  comEC Vibrio parahaemolyticus RIMD 2210633

41.347

100

0.419
  comEC Vibrio campbellii strain DS40M4

41.223

100

0.415