Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   NRK31_RS04135 Genome accession   NZ_CP123852
Coordinates   831113..833173 (-) Length   686 a.a.
NCBI ID   WP_042727651.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 5812R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 826113..838173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK31_RS04105 rnc 826122..826853 (-) 732 WP_000043237.1 ribonuclease III -
  NRK31_RS04110 - 826969..827202 (-) 234 WP_000426914.1 acyl carrier protein -
  NRK31_RS04115 fabG 827701..828435 (-) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  NRK31_RS04120 fabD 828428..829354 (-) 927 WP_000047347.1 ACP S-malonyltransferase -
  NRK31_RS04125 plsX 829347..830333 (-) 987 WP_000239742.1 phosphate acyltransferase PlsX -
  NRK31_RS04130 fapR 830338..830910 (-) 573 WP_001548538.1 transcription factor FapR -
  NRK31_RS04135 recG 831113..833173 (-) 2061 WP_042727651.1 ATP-dependent DNA helicase RecG Machinery gene
  NRK31_RS04140 fakA 833363..835009 (-) 1647 WP_000623903.1 fatty acid kinase catalytic subunit FakA -
  NRK31_RS04145 - 835024..835398 (-) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  NRK31_RS04150 rpmB 835841..836029 (+) 189 WP_000517908.1 50S ribosomal protein L28 -
  NRK31_RS04155 - 836410..837051 (-) 642 WP_000547905.1 thiamine diphosphokinase -
  NRK31_RS04160 rpe 837058..837702 (-) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78303.81 Da        Isoelectric Point: 6.0596

>NTDB_id=752826 NRK31_RS04135 WP_042727651.1 831113..833173(-) (recG) [Staphylococcus aureus strain 5812R]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQGEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQNQENADVQLEPVYRIKEG
IKQNQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDIDRVKSFIDCLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=752826 NRK31_RS04135 WP_042727651.1 831113..833173(-) (recG) [Staphylococcus aureus strain 5812R]
TTGGCTAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGGAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTTGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACCGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGAGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGTACACAAAATCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAATCAAATACGAGACCAAATTAGACAAGCATTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACGTTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACATAGACCGAGTTAAATCATTTATTGATTGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCTTTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACGCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATTATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTAATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTATCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGTAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGGTTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGCAGTTTTGACTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

DEAD/DEAH box helicase (DEAD)

(267-422)

RecG wedge domain (RecG_wedge)

(16-175)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

52.924

97.23

0.515
  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474
  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474
  recG Neisseria meningitidis strain C311

39.608

96.793

0.383