Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NRK31_RS01895 Genome accession   NZ_CP123852
Coordinates   351009..351611 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 5812R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 346009..356611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRK31_RS01860 mreC 346083..346925 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  NRK31_RS01865 mreD 346925..347455 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  NRK31_RS01870 rplU 347817..348125 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  NRK31_RS01875 - 348131..348451 (+) 321 WP_042727697.1 ribosomal-processing cysteine protease Prp -
  NRK31_RS01880 rpmA 348463..348747 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  NRK31_RS01885 obgE 349235..350527 (+) 1293 WP_000496100.1 GTPase ObgE -
  NRK31_RS01890 - 350540..350995 (+) 456 WP_000368902.1 ACT domain-containing protein -
  NRK31_RS01895 ruvA 351009..351611 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  NRK31_RS01900 ruvB 351643..352647 (+) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NRK31_RS01905 queA 352649..353674 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  NRK31_RS01910 tgt 353697..354836 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  NRK31_RS01915 yajC 354855..355115 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=752797 NRK31_RS01895 WP_000271547.1 351009..351611(+) (ruvA) [Staphylococcus aureus strain 5812R]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=752797 NRK31_RS01895 WP_000271547.1 351009..351611(+) (ruvA) [Staphylococcus aureus strain 5812R]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425