Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   A6U93_RS07810 Genome accession   NZ_CP123838
Coordinates   1529498..1531603 (+) Length   701 a.a.
NCBI ID   WP_065659298.1    Uniprot ID   A0A1B9TTJ2
Organism   Agrobacterium tumefaciens strain 15-1187-1-2a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1524498..1536603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6U93_RS07795 (A6U93_07795) - 1524778..1525122 (-) 345 WP_013636325.1 hypothetical protein -
  A6U93_RS07800 (A6U93_07800) mfd 1525498..1528995 (-) 3498 WP_065659299.1 transcription-repair coupling factor -
  A6U93_RS07805 (A6U93_07805) - 1528999..1529310 (-) 312 WP_003515739.1 succinate dehydrogenase assembly factor 2 -
  A6U93_RS07810 (A6U93_07810) recG 1529498..1531603 (+) 2106 WP_065659298.1 ATP-dependent DNA helicase RecG Machinery gene
  A6U93_RS07815 (A6U93_07815) - 1531616..1531888 (+) 273 WP_013636329.1 hypothetical protein -
  A6U93_RS07820 (A6U93_07820) - 1531943..1532200 (+) 258 WP_003515745.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  A6U93_RS07825 (A6U93_07825) - 1532197..1532580 (+) 384 WP_013636330.1 type II toxin-antitoxin system VapC family toxin -
  A6U93_RS07830 (A6U93_07830) - 1532584..1533252 (-) 669 WP_003515749.1 DUF502 domain-containing protein -
  A6U93_RS07835 (A6U93_07835) - 1533266..1533769 (-) 504 WP_013636331.1 GNAT family N-acetyltransferase -
  A6U93_RS07840 (A6U93_07840) glmS 1533766..1535592 (-) 1827 WP_013636332.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76519.15 Da        Isoelectric Point: 7.1162

>NTDB_id=752733 A6U93_RS07810 WP_065659298.1 1529498..1531603(+) (recG) [Agrobacterium tumefaciens strain 15-1187-1-2a]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLANAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=752733 A6U93_RS07810 WP_065659298.1 1529498..1531603(+) (recG) [Agrobacterium tumefaciens strain 15-1187-1-2a]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCCGACGACACCCGCGTGATCGATCTTCTGTTCCACGCGCCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTGTCACCATTCAGGGACGTGTCGACCGGCATCAG
CCAGCTCCACCGGGCAATCGTTCCGCGCCCTACCGTGTTTTCCTGCATGACGAGACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTGCCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTCTCCGAGGCCGAGAACCTGCCGCTGGTCGAAGCCGTT
TATCCGATGACAGCCGGGCTGTCTCCGAAGGTGCTGCGGCGGGCAATTGAAGGCGGACTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAAACGCTGAAGACCCGGCAGGGGTTCGGCGACGTGGCATCGAGCTTCCGTGAGTTGCACGACCCAC
GCGACAGCGCCGATATCGATCCTCAGGCCCCGGCGCGCAGACGGCTTGCCTATGACGAATTCCTCGCCGGACAATTATCT
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCCGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTGCCCTTCTCCCTGACGCCGAGCCAGAATGCCTCGGTGAAAGATATCCTGACCGATATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTGCAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGCGGACAGGCGGTGTTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCGCCACCATCTCCAAACTCGCCAA
TGCCGCGGGCATTACGGTTGAGGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGCGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACCCACGCGCTGTTCCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGCATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTTGTGCTGGCCGCCTTCGGCGACATGGATGTGTCGAAACTCACCGAAAAACCGG
CCGGACGAAAACCCATCCAGACCGTGACAATCCCCACAGAGCGCATCGGCGACATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAGGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCCGACCTGATGTCGGCGGAAGAACG
ACATGCGGTTCTCTCGCAGATGCTCGGTGCCAATATCGGTCTCATCCACGGGCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTGGCTTTCAAGAACGGCGAAACCCGGCTGCTGGTGGCAACGACAGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTGGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGCACCCCGGGCTTCCGCATTGCCAGCCTCGAAGCCCATGCCGACCTCCTGGAAATCGCCCGCAAGGATGCCGCCTATGT
CATCGAGCGCGACCCCGAACTGACCGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CTATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(275-432)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

RecG wedge domain (RecG_wedge)

(18-180)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9TTJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.169

94.722

0.399
  recG/mmsA Streptococcus pneumoniae R6

40.588

97.004

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.588

97.004

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

38.663

98.146

0.379