Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QFA72_RS19075 Genome accession   NZ_CP123780
Coordinates   4312519..4313118 (+) Length   199 a.a.
NCBI ID   WP_065487966.1    Uniprot ID   A0ABQ2T227
Organism   Streptomyces sp. SH5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4307519..4318118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFA72_RS19050 (QFA72_19050) - 4307581..4308963 (+) 1383 WP_280931650.1 aspartate aminotransferase family protein -
  QFA72_RS19055 (QFA72_19055) - 4309145..4309972 (+) 828 WP_280931652.1 GntR family transcriptional regulator -
  QFA72_RS19060 (QFA72_19060) - 4310033..4310683 (+) 651 WP_280931654.1 hypothetical protein -
  QFA72_RS19065 (QFA72_19065) - 4310910..4311752 (-) 843 WP_280931656.1 SLATT domain-containing protein -
  QFA72_RS19070 (QFA72_19070) - 4312052..4312396 (+) 345 WP_003967515.1 YbaB/EbfC family nucleoid-associated protein -
  QFA72_RS19075 (QFA72_19075) recR 4312519..4313118 (+) 600 WP_065487966.1 recombination mediator RecR Machinery gene
  QFA72_RS19080 (QFA72_19080) - 4313253..4313912 (+) 660 WP_189525388.1 DUF5063 domain-containing protein -
  QFA72_RS19085 (QFA72_19085) - 4314191..4315462 (+) 1272 WP_189525391.1 aspartate kinase -
  QFA72_RS19090 (QFA72_19090) - 4315459..4316529 (+) 1071 WP_189525392.1 aspartate-semialdehyde dehydrogenase -
  QFA72_RS19095 (QFA72_19095) - 4316892..4317467 (+) 576 WP_032766995.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21828.13 Da        Isoelectric Point: 5.1721

>NTDB_id=752681 QFA72_RS19075 WP_065487966.1 4312519..4313118(+) (recR) [Streptomyces sp. SH5]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALLEVKDKVRFCEVCGNVAQQERCGICRDARRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=752681 QFA72_RS19075 WP_065487966.1 4312519..4313118(+) (recR) [Streptomyces sp. SH5]
TTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTGCAGGCCGAGCCCACCGACGTACGCCGGCTCGCCCACGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGAGGTGTGCGGCAATGTCGCGCAGCAGGAGCGGTGCGGGATCTGCCGGGACGCGCGCCGCGATCCGAGCGTC
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACGCGCGAGTTCCGGGGCCGCTACCACGTGCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTGGCGCGGCTCGCGGACGGCT
CGATCACGGAGCTGATCCTCGCGACCGACCCCAATCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTCAAGGTGACCCGGCTGGCCAGTGGTCTGCCGGTCGGCGGCGATCTGGAGTACGCCGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGGCTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452