Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   GZH91_RS06820 Genome accession   NZ_AP021884
Coordinates   1285698..1286489 (-) Length   263 a.a.
NCBI ID   WP_147074621.1    Uniprot ID   A0A512LB07
Organism   Sulfuriferula plumbiphila strain Gro7     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280698..1291489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH91_RS06800 (SFPGR_13390) sucC 1281634..1282803 (+) 1170 WP_147074625.1 ADP-forming succinate--CoA ligase subunit beta -
  GZH91_RS06805 (SFPGR_13400) sucD 1282805..1283677 (+) 873 WP_147074624.1 succinate--CoA ligase subunit alpha -
  GZH91_RS06810 (SFPGR_13410) - 1283674..1285275 (+) 1602 WP_147074623.1 NAD+ synthase -
  GZH91_RS06815 (SFPGR_13420) - 1285300..1285638 (+) 339 WP_147074622.1 P-II family nitrogen regulator -
  GZH91_RS06820 (SFPGR_13430) comL 1285698..1286489 (-) 792 WP_147074621.1 outer membrane protein assembly factor BamD Machinery gene
  GZH91_RS06825 (SFPGR_13440) rluD 1286551..1287456 (+) 906 WP_232522223.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GZH91_RS06830 (SFPGR_13450) pgeF 1287453..1288205 (+) 753 WP_147074619.1 peptidoglycan editing factor PgeF -
  GZH91_RS06835 (SFPGR_13460) - 1288270..1289979 (+) 1710 WP_161984197.1 autotransporter assembly complex family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30095.13 Da        Isoelectric Point: 8.3169

>NTDB_id=75267 GZH91_RS06820 WP_147074621.1 1285698..1286489(-) (comL) [Sulfuriferula plumbiphila strain Gro7]
MKRSLLVLLVVLLAGCGLLPKTVDETQGWSAQRLYAEAKDQLNSGGYEKAIKYFETLEARYPYGRYAQQAQLEVAYAYYK
DNEPVSAIAACDRFIKLHPEHPNVDYAYYLRGLANFTEDQGLLGSIGDQDMTERDPKAARESFDSFRELVTRFPNSKYAP
DSLARMKYLVDALASHEVHVALYYYKRGAYVAASKRAQYAIEHYPNAPAIEQALAVLVKSYDKIGINDLRDDALRVLQKN
FPNSKYVSGNFDKSKPWWRFWQL

Nucleotide


Download         Length: 792 bp        

>NTDB_id=75267 GZH91_RS06820 WP_147074621.1 1285698..1286489(-) (comL) [Sulfuriferula plumbiphila strain Gro7]
ATGAAACGAAGTTTACTTGTTTTGTTGGTGGTACTGCTGGCCGGATGTGGCTTGTTACCCAAGACGGTTGATGAAACCCA
GGGCTGGTCAGCACAAAGACTCTACGCGGAAGCCAAGGATCAGCTCAATTCGGGTGGCTACGAAAAAGCCATCAAATACT
TCGAGACGCTGGAAGCGCGTTACCCCTACGGCCGCTATGCGCAGCAGGCGCAACTGGAAGTGGCCTACGCCTATTACAAG
GACAATGAGCCGGTTTCCGCCATTGCCGCCTGCGACCGCTTCATCAAGCTGCACCCCGAACATCCCAATGTGGATTACGC
CTACTACCTGAGGGGACTGGCCAACTTTACCGAAGACCAGGGGCTGTTGGGAAGTATTGGGGACCAGGATATGACCGAGC
GCGATCCCAAGGCCGCACGCGAGTCGTTTGATTCGTTCCGCGAACTGGTCACACGTTTTCCGAACAGCAAATATGCCCCG
GATTCGCTGGCGCGCATGAAATACCTGGTGGATGCGCTGGCCTCGCACGAAGTCCACGTCGCCCTGTATTACTACAAGCG
CGGTGCCTATGTCGCAGCCAGCAAGCGCGCGCAGTACGCGATTGAGCACTACCCCAATGCACCCGCGATCGAGCAGGCGC
TGGCAGTGCTGGTAAAGTCCTACGATAAAATAGGCATCAATGACTTGCGCGATGATGCCTTGCGCGTGCTGCAGAAAAAT
TTCCCGAACAGCAAATATGTCTCCGGCAATTTTGACAAAAGCAAACCCTGGTGGCGTTTCTGGCAACTCTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512LB07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

51.685

100

0.525
  comL Neisseria gonorrhoeae MS11

50.562

100

0.513

Multiple sequence alignment