Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QFX54_RS08105 Genome accession   NZ_CP123750
Coordinates   1668506..1669108 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 1.9a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1663506..1674108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX54_RS08085 yajC 1665002..1665262 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  QFX54_RS08090 tgt 1665281..1666420 (-) 1140 WP_304984663.1 tRNA guanosine(34) transglycosylase Tgt -
  QFX54_RS08095 queA 1666443..1667468 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QFX54_RS08100 ruvB 1667470..1668474 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QFX54_RS08105 ruvA 1668506..1669108 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  QFX54_RS08110 - 1669122..1669577 (-) 456 WP_000368902.1 ACT domain-containing protein -
  QFX54_RS08115 obgE 1669590..1670882 (-) 1293 WP_000496100.1 GTPase ObgE -
  QFX54_RS08120 rpmA 1671237..1671521 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  QFX54_RS08125 - 1671533..1671853 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QFX54_RS08130 rplU 1671859..1672167 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  QFX54_RS08135 mreD 1672334..1672864 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  QFX54_RS08140 mreC 1672864..1673706 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  QFX54_RS08145 - 1673906..1674025 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=752612 QFX54_RS08105 WP_000271547.1 1668506..1669108(-) (ruvA) [Staphylococcus aureus strain 1.9a]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=752612 QFX54_RS08105 WP_000271547.1 1668506..1669108(-) (ruvA) [Staphylococcus aureus strain 1.9a]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425