Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OH720_RS27510 Genome accession   NZ_CP110128
Coordinates   6118680..6120011 (+) Length   443 a.a.
NCBI ID   WP_272603597.1    Uniprot ID   -
Organism   Pseudomonas sp. WJP1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6113680..6125011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS27485 (OH720_27495) pgeF 6113846..6114598 (-) 753 WP_272603594.1 peptidoglycan editing factor PgeF -
  OH720_RS27490 (OH720_27500) rluD 6114595..6115557 (-) 963 WP_008058321.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OH720_RS27495 (OH720_27505) - 6115709..6116731 (+) 1023 WP_272603595.1 outer membrane protein assembly factor BamD -
  OH720_RS27500 (OH720_27510) - 6116868..6117101 (+) 234 WP_180204561.1 PP0621 family protein -
  OH720_RS27505 (OH720_27515) pilS 6117091..6118677 (+) 1587 WP_272603596.1 ATP-binding protein Regulator
  OH720_RS27510 (OH720_27520) pilR 6118680..6120011 (+) 1332 WP_272603597.1 sigma-54 dependent transcriptional regulator Regulator
  OH720_RS27515 (OH720_27525) thiO 6120075..6121175 (-) 1101 WP_272603598.1 glycine oxidase ThiO -
  OH720_RS27520 (OH720_27530) - 6121231..6121632 (-) 402 WP_272603599.1 type IV pilin protein -
  OH720_RS27525 (OH720_27535) - 6121647..6123479 (-) 1833 Protein_5422 PilC/PilY family type IV pilus protein -
  OH720_RS27530 (OH720_27540) - 6123586..6124071 (-) 486 WP_272603600.1 PilX N-terminal domain-containing pilus assembly protein -
  OH720_RS27535 (OH720_27545) - 6124068..6124781 (-) 714 WP_272603601.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49539.04 Da        Isoelectric Point: 6.7012

>NTDB_id=752543 OH720_RS27510 WP_272603597.1 6118680..6120011(+) (pilR) [Pseudomonas sp. WJP1]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTYSARNVGEALTLLQRETFDLCLTDMRLPDGSGLELVQHIQQRYPQVPVA
MITAYGNLDTAIQALKAGAFDFLTKPVDLTRLRELVTSALLLPAPGTAIDRRLLGDSPPMRDLRKQIDKLARSQAPVYIS
GESGSGKELVARLIHERGPRANQPFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLP
MQVKLLRAIQEKAVRSVGGQQEKLVDVRILCATHKDLGAEVAAERFRQDLYYRLNVIELRVPPLRERREDIEPLASHVLK
RLAADTGQPAAKLHPNALDALKSYRFPGNVRELENMLERAHTLCENKLIEASDLRLAEGNCAAEVGVPDLTQIDNLEAYL
ENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=752543 OH720_RS27510 WP_272603597.1 6118680..6120011(+) (pilR) [Pseudomonas sp. WJP1]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGGTCGAAT
GAAACTCGACACCTACAGCGCCCGTAACGTTGGCGAGGCCCTGACCCTGCTCCAACGCGAGACGTTCGACCTGTGCCTGA
CCGACATGCGCTTGCCGGACGGCAGCGGCCTCGAGCTGGTGCAACACATCCAGCAACGCTACCCACAAGTCCCGGTGGCC
ATGATCACCGCCTATGGCAACCTCGACACGGCGATCCAAGCGCTGAAGGCCGGTGCGTTCGATTTCCTGACCAAACCGGT
GGACCTTACCCGCCTGCGGGAACTGGTGACCAGTGCCTTGCTGCTGCCCGCCCCTGGCACCGCCATCGATCGCCGCTTGC
TGGGCGACTCGCCGCCCATGCGCGATCTGCGCAAGCAGATCGACAAACTGGCCCGCAGCCAGGCACCGGTGTACATCAGT
GGTGAGTCCGGCAGTGGCAAGGAACTGGTCGCCCGCCTGATTCATGAGCGAGGACCACGGGCCAACCAGCCCTTTGTGCC
AGTCAATTGCGGCGCGATTCCGACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCAGCTTCAGCGGCGCCA
TCGAGGACAAACCCGGGTTGTTCCAGGCGGCCCACGGCGGCACCCTGTTTCTCGACGAAGTGGCAGACCTGCCCCTGCCC
ATGCAAGTCAAACTGCTGCGGGCGATTCAGGAGAAAGCTGTACGCAGCGTCGGTGGGCAACAGGAGAAGTTGGTCGATGT
GCGCATACTGTGCGCCACCCACAAAGACCTTGGCGCTGAAGTCGCTGCCGAACGTTTTCGCCAGGATCTGTATTACCGCC
TGAACGTGATCGAGCTACGGGTTCCACCTTTACGTGAACGCCGTGAAGACATCGAACCGCTGGCCAGCCACGTGCTCAAG
CGCCTGGCTGCAGACACTGGACAGCCCGCGGCAAAGCTCCACCCCAATGCCCTCGACGCCCTGAAAAGCTACCGTTTCCC
GGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGGGCGCACACCTTATGTGAAAACAAGCTGATCGAGGCCAGCGACC
TGCGCCTGGCCGAGGGTAACTGTGCCGCCGAAGTGGGCGTGCCGGACCTCACGCAGATCGATAACCTGGAGGCGTACCTG
GAAAACGTTGAACGCCAGCTGCTGCTCCAGGCGCTGGAGGAGACCCGCTGGAACCGCACGGCGGCGGCTCAGCGGTTGAA
TCTGTCGTTTAGGTCGATGCGCTACAGGCTGAAGAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.684

100

0.797
  pilR Acinetobacter baumannii strain A118

50.652

100

0.526