Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OH720_RS27505 Genome accession   NZ_CP110128
Coordinates   6117091..6118677 (+) Length   528 a.a.
NCBI ID   WP_272603596.1    Uniprot ID   -
Organism   Pseudomonas sp. WJP1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6112091..6123677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS27485 (OH720_27495) pgeF 6113846..6114598 (-) 753 WP_272603594.1 peptidoglycan editing factor PgeF -
  OH720_RS27490 (OH720_27500) rluD 6114595..6115557 (-) 963 WP_008058321.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OH720_RS27495 (OH720_27505) - 6115709..6116731 (+) 1023 WP_272603595.1 outer membrane protein assembly factor BamD -
  OH720_RS27500 (OH720_27510) - 6116868..6117101 (+) 234 WP_180204561.1 PP0621 family protein -
  OH720_RS27505 (OH720_27515) pilS 6117091..6118677 (+) 1587 WP_272603596.1 ATP-binding protein Regulator
  OH720_RS27510 (OH720_27520) pilR 6118680..6120011 (+) 1332 WP_272603597.1 sigma-54 dependent transcriptional regulator Regulator
  OH720_RS27515 (OH720_27525) thiO 6120075..6121175 (-) 1101 WP_272603598.1 glycine oxidase ThiO -
  OH720_RS27520 (OH720_27530) - 6121231..6121632 (-) 402 WP_272603599.1 type IV pilin protein -
  OH720_RS27525 (OH720_27535) - 6121647..6123479 (-) 1833 Protein_5422 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 58651.65 Da        Isoelectric Point: 7.6215

>NTDB_id=752542 OH720_RS27505 WP_272603596.1 6117091..6118677(+) (pilS) [Pseudomonas sp. WJP1]
MIAETSSPGDKQAQRLLRLYHLYRLSIGLILVLLISSDMDNRLLSSANADLLRGGSWLYLVLNILLVVFFGNTRRPALLF
SLALVDVLLLCGLFYAGGGVASAIGNLLIVSVAISNTLLRKSIGLLIAAISALGILGSSFLLNVSHQASPNDYLQVGTLG
VLYFAAALLVQGLTRRLEVSETLAEQKASQVVGLEALNALILQRMRTGILVLDDQWRVQLANHSAMTLLGCEHLEGRRIN
EQAPSLVERLQLWINNPTLRPQSLKIARSGLELQPSFIALFPGPHHQTLVFLEDLAQITQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNAADRRLTQIIQDHSQRMNRVIENVLQLSRRQPTTAQRLDLRPWLEQFVTATREQANEQ
QKIHLRVAPGDFRTLMDPNQLEQILDNLIRNAWRHSALNHDQAQVWLELFTDPDSQLPVLEIIDDGPGVAPEHQAQLFEP
FFTTSHQGTGLGLYLSRELCESNQARLDFKPRQGGCFRITFAHGRKQG

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=752542 OH720_RS27505 WP_272603596.1 6117091..6118677(+) (pilS) [Pseudomonas sp. WJP1]
GTGATCGCTGAGACGTCCAGTCCCGGCGACAAACAGGCCCAGCGACTGCTGCGTCTCTATCACCTCTACCGCTTAAGCAT
CGGCCTCATTCTGGTGCTGCTGATTTCCAGCGACATGGACAACCGGTTGCTGTCGTCCGCCAACGCCGACCTGCTGCGCG
GCGGCAGCTGGTTGTATCTGGTGCTGAACATCCTGCTGGTGGTCTTCTTCGGGAACACCCGCCGCCCCGCGCTGCTGTTC
AGCCTGGCACTGGTCGACGTCCTGCTGCTTTGCGGGTTGTTCTACGCCGGCGGCGGTGTGGCCAGCGCCATTGGCAACTT
GCTGATCGTCTCGGTGGCCATCAGCAATACCTTGTTGCGAAAAAGCATCGGCCTGCTGATTGCCGCCATCAGCGCCCTTG
GCATCCTGGGTTCGAGCTTCCTGCTGAATGTCAGCCATCAGGCCAGTCCCAACGATTATTTGCAGGTCGGTACCCTTGGC
GTCCTGTATTTTGCCGCCGCGCTGCTGGTGCAAGGCCTGACCCGACGACTGGAAGTCAGCGAAACCCTGGCCGAACAAAA
GGCCAGCCAGGTCGTCGGCCTGGAAGCCCTCAATGCACTGATACTGCAACGCATGCGCACAGGCATCCTGGTGCTTGACG
ACCAATGGCGCGTGCAACTGGCCAATCACAGCGCCATGACCCTGCTGGGCTGCGAGCACCTCGAAGGCCGGCGGATCAAC
GAACAGGCCCCTTCCCTGGTCGAGCGCCTGCAACTGTGGATCAACAACCCGACGCTGCGCCCACAAAGCCTGAAGATCGC
CCGCAGTGGCCTTGAACTACAGCCAAGCTTCATTGCTCTGTTTCCCGGCCCGCATCACCAGACCTTGGTCTTTCTCGAAG
ACCTCGCACAGATCACTCAACAGGCCCAGCAACTGAAGCTCGCCGCCTTGGGTCGCCTGACCGCCGGGATCGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGTCACGCCGCGCAGCTGTTGCGAGAATCGGAGGAACTGAATGCCGCGGATCGACG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGCATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
CAACCACGGCCCAACGACTCGATCTGAGGCCCTGGCTGGAACAGTTCGTGACGGCAACCCGCGAACAGGCGAACGAGCAG
CAGAAGATCCACCTACGCGTTGCTCCCGGTGATTTCAGGACCTTGATGGACCCGAACCAGCTAGAGCAGATTCTCGACAA
TCTGATTCGCAATGCATGGCGCCATAGCGCCCTGAACCACGACCAGGCGCAGGTCTGGCTTGAGTTGTTCACCGATCCGG
ACAGCCAGCTGCCTGTCCTGGAAATCATCGACGACGGCCCTGGCGTGGCCCCGGAGCATCAAGCGCAATTGTTCGAGCCC
TTCTTCACTACCAGCCACCAGGGCACTGGGCTGGGGCTTTACCTGTCCCGCGAGCTGTGCGAAAGCAACCAGGCCCGCCT
GGACTTCAAGCCACGCCAAGGCGGCTGCTTTCGCATCACCTTTGCCCACGGACGCAAACAAGGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.333

100

0.583