Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OH720_RS24900 Genome accession   NZ_CP110128
Coordinates   5558794..5561019 (-) Length   741 a.a.
NCBI ID   WP_272603286.1    Uniprot ID   -
Organism   Pseudomonas sp. WJP1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5553794..5566019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS24865 (OH720_24870) murB 5554164..5555183 (-) 1020 WP_272603282.1 UDP-N-acetylmuramate dehydrogenase -
  OH720_RS24870 (OH720_24875) - 5555180..5555644 (-) 465 WP_272603283.1 low molecular weight protein-tyrosine-phosphatase -
  OH720_RS24875 (OH720_24880) kdsB 5555644..5556408 (-) 765 WP_272603284.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OH720_RS24880 (OH720_24885) - 5556405..5556590 (-) 186 WP_007945752.1 Trm112 family protein -
  OH720_RS24885 (OH720_24890) lpxK 5556616..5557626 (-) 1011 WP_272603285.1 tetraacyldisaccharide 4'-kinase -
  OH720_RS24890 (OH720_24895) - 5557626..5558054 (-) 429 WP_008066569.1 biopolymer transporter ExbD -
  OH720_RS24895 (OH720_24900) exbB 5558051..5558686 (-) 636 WP_008066570.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OH720_RS24900 (OH720_24905) comA 5558794..5561019 (-) 2226 WP_272603286.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OH720_RS24905 (OH720_24910) - 5561156..5561671 (+) 516 WP_008066572.1 DUF2062 domain-containing protein -
  OH720_RS24910 (OH720_24915) - 5562479..5563258 (-) 780 WP_008062909.1 ABC transporter permease -
  OH720_RS24915 (OH720_24920) - 5563255..5564187 (-) 933 WP_272603287.1 ABC transporter ATP-binding protein -
  OH720_RS24920 (OH720_24925) - 5564320..5564943 (-) 624 WP_272603288.1 glutathione S-transferase -
  OH720_RS24925 (OH720_24930) - 5564987..5565646 (-) 660 WP_272606518.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 81347.62 Da        Isoelectric Point: 10.3425

>NTDB_id=752538 OH720_RS24900 WP_272603286.1 5558794..5561019(-) (comA) [Pseudomonas sp. WJP1]
MRTGMMALALGLLALRFLPVLPPVWLWLLMPVAGLMLLPFRTYPAAFFLFGLSWACANAQWALDDRLSPALDGETRWVEG
RVSGLPQNGEGVVRFELTDSQSRRTVLPQHLRLAWYDGPPVNSGERWRLAVKLKRPVGLLNPHAFDYEAWLLAQRIGATG
TVKAGERLAPARWAWRDGIRQRLQAVDAQGRTGVLVALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHVGLLAGLVYLL
IAGLARYGLWPGRLPWLPWACGLAFVAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALNGVLLMDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWPWWQTWTRAQWLIAIGLGPFLLVLGLPISLSGPLVNLLAVPWISLVVLPPAL
LGTLLLPVPYIGEGLLWLAGGLIDWLFTGLALVAGKVPAWVPAAIPLWVWGIGTLGAFLLLLPRGVPIRPLGWPLLLLLV
FPPRPMLPEGIAEVWQLDVGQGLAIMVRTRHHTLLYDAGPRVRGLDQGERVVLPALRKLGVKAVDLMLISHAHADHSGGA
RAVANGLPVKRVLSGEPADLPGELQAGGCESGRQWTWDGVNFQLWHWPLARDSNQNSCVLQIEANGERLLLSGDIDTHAE
RALLDSALAVPTDWLQAPHHGSRSSSSMALLNVLKPKAALISRGHGNSFGHPHPVVIERYRHRAMAIYDSAEQGAVHLQL
GRFEAPRSMRQERRFWRDPPP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=752538 OH720_RS24900 WP_272603286.1 5558794..5561019(-) (comA) [Pseudomonas sp. WJP1]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGCCTGTTGGCCTTGCGTTTTTTACCGGTGTTACCGCCGGTCTGGTTGTG
GTTATTGATGCCGGTGGCCGGCTTGATGTTGCTGCCGTTCAGGACGTATCCGGCGGCGTTTTTCCTGTTCGGCCTGAGTT
GGGCCTGCGCCAATGCCCAATGGGCCCTGGATGATCGGCTGTCGCCGGCCCTCGACGGGGAAACGCGTTGGGTCGAAGGG
CGGGTCAGCGGGTTGCCACAGAATGGCGAGGGTGTGGTGCGTTTCGAACTGACCGATAGTCAGTCACGCCGCACCGTCCT
GCCGCAACATTTACGTTTGGCCTGGTACGACGGCCCGCCGGTCAACAGCGGTGAACGCTGGCGGCTGGCGGTCAAGCTGA
AGCGACCCGTGGGGTTGCTCAATCCACATGCCTTCGACTACGAGGCCTGGCTGTTGGCGCAACGTATTGGTGCAACCGGT
ACCGTCAAGGCCGGGGAGCGACTTGCGCCTGCCCGGTGGGCCTGGCGCGACGGTATCCGCCAGAGGCTGCAGGCCGTGGA
CGCCCAGGGCCGGACTGGCGTGCTGGTGGCGTTGGTGCTCGGAGACGGCGCGGGGCTCAGTCGCGAAGACTGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTGATTTCCGGGCAACACGTCGGCTTGTTGGCGGGGCTGGTTTATCTGTTG
ATCGCCGGGCTTGCCCGTTACGGCTTGTGGCCAGGCCGTCTGCCATGGTTGCCCTGGGCCTGCGGCCTGGCTTTCGTTGC
CGCCCTTGGCTATGGGCTGCTGGCTGGCTTCGAAGTGCCGGTTCGCCGGGCCTGCCTGATGATCGGCCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGCCACCTCGGTGCCTGGTGGCCGCTGTTGCTGGCGCTCAATGGCGTCTTGCTGATGGACCCGTTG
GCGAGTCTGCAACCGGGTTTCTGGCTGTCCTTCGCGGCGGTGGCGGTGCTGATCTTCACGTTCGGTGGGCGCCTGGGACC
TTGGCCATGGTGGCAAACCTGGACCCGTGCACAGTGGCTGATCGCTATCGGCCTTGGCCCGTTCTTGCTGGTCCTGGGAT
TGCCGATCAGCCTCAGCGGGCCACTGGTCAACCTGCTGGCGGTGCCCTGGATCAGCCTGGTGGTGCTGCCCCCTGCATTG
CTCGGCACACTGTTGCTGCCGGTGCCCTACATCGGCGAGGGGTTGCTGTGGCTGGCGGGTGGCTTGATCGATTGGCTGTT
CACTGGGCTGGCATTGGTCGCCGGCAAGGTTCCCGCGTGGGTGCCCGCGGCCATTCCGCTATGGGTCTGGGGCATCGGCA
CACTGGGCGCCTTTTTGTTGCTGCTGCCGCGCGGCGTGCCGATACGACCGTTAGGCTGGCCTTTGCTGCTATTGCTGGTT
TTTCCGCCGCGGCCGATGCTGCCCGAAGGCATTGCCGAGGTCTGGCAACTGGATGTGGGGCAAGGGCTGGCGATCATGGT
GCGCACTCGCCATCACACACTGTTGTATGACGCCGGTCCGCGTGTGCGTGGTCTTGACCAGGGTGAGCGGGTGGTACTGC
CGGCACTGCGCAAACTGGGGGTGAAGGCGGTCGACCTGATGTTGATCAGCCATGCCCATGCCGATCACTCCGGTGGCGCC
CGGGCAGTGGCCAATGGCTTGCCGGTCAAACGGGTGCTCAGTGGCGAACCTGCCGACCTGCCTGGCGAGTTGCAGGCCGG
GGGCTGTGAGAGCGGCCGGCAATGGACGTGGGACGGGGTGAACTTTCAACTGTGGCACTGGCCGCTGGCCAGGGACAGCA
ACCAGAATTCCTGCGTGTTGCAGATCGAAGCCAATGGCGAGCGATTGTTGCTCAGCGGTGACATCGACACCCACGCCGAA
CGCGCGTTGCTCGACAGCGCATTGGCCGTGCCTACCGATTGGTTGCAGGCACCGCACCACGGTAGTCGCAGTTCGTCTTC
GATGGCGCTGCTCAACGTCTTGAAGCCCAAGGCGGCACTGATCTCCCGTGGTCATGGCAACTCGTTCGGCCATCCCCATC
CGGTGGTGATCGAACGCTATCGGCATCGTGCGATGGCGATCTACGACAGTGCGGAGCAAGGCGCCGTTCATCTGCAGCTG
GGGCGTTTCGAAGCGCCGCGCTCAATGCGTCAAGAACGTCGTTTCTGGCGTGATCCGCCACCCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.408

96.626

0.613
  comA Ralstonia pseudosolanacearum GMI1000

33.373

100

0.379