Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OH720_RS24895 Genome accession   NZ_CP110128
Coordinates   5558051..5558686 (-) Length   211 a.a.
NCBI ID   WP_008066570.1    Uniprot ID   J3D0U5
Organism   Pseudomonas sp. WJP1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5553051..5563686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS24860 (OH720_24865) - 5553453..5553923 (-) 471 WP_008066557.1 (2Fe-2S)-binding protein -
  OH720_RS24865 (OH720_24870) murB 5554164..5555183 (-) 1020 WP_272603282.1 UDP-N-acetylmuramate dehydrogenase -
  OH720_RS24870 (OH720_24875) - 5555180..5555644 (-) 465 WP_272603283.1 low molecular weight protein-tyrosine-phosphatase -
  OH720_RS24875 (OH720_24880) kdsB 5555644..5556408 (-) 765 WP_272603284.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OH720_RS24880 (OH720_24885) - 5556405..5556590 (-) 186 WP_007945752.1 Trm112 family protein -
  OH720_RS24885 (OH720_24890) lpxK 5556616..5557626 (-) 1011 WP_272603285.1 tetraacyldisaccharide 4'-kinase -
  OH720_RS24890 (OH720_24895) - 5557626..5558054 (-) 429 WP_008066569.1 biopolymer transporter ExbD -
  OH720_RS24895 (OH720_24900) exbB 5558051..5558686 (-) 636 WP_008066570.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OH720_RS24900 (OH720_24905) comA 5558794..5561019 (-) 2226 WP_272603286.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OH720_RS24905 (OH720_24910) - 5561156..5561671 (+) 516 WP_008066572.1 DUF2062 domain-containing protein -
  OH720_RS24910 (OH720_24915) - 5562479..5563258 (-) 780 WP_008062909.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22955.20 Da        Isoelectric Point: 7.3617

>NTDB_id=752537 OH720_RS24895 WP_008066570.1 5558051..5558686(-) (exbB) [Pseudomonas sp. WJP1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=752537 OH720_RS24895 WP_008066570.1 5558051..5558686(-) (exbB) [Pseudomonas sp. WJP1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATCCTGAGTTCCATCGCGGCCATGGCAATTGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAATAAGGAAAAGCTCAAGGAGCTGCGCGCCAATTCGCCGTTGGGTGAAATCCTGGCCGCTGGCCTGGCGAAT
TCCCGGCATGGTCGCGAGATCATGAAGGAGTGTATCGAAGAGGCCGCCGCGCGGGTCATCCACGAGCTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGTTGCTGGGACTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCGCGTTCATGGGCACGGGCATGACCACCAACGCCGCAGTGCTGGCCGGGGGTATCTCCAAGGCGCTGATTACCACGGCT
GCCGGTTTGATGGTCGGTATCCCGTCGGTATTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTCGTGCAGGGTGATCGTGACGTGGATCTGGCGGGGGTCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3D0U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839