Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QFX51_RS05870 Genome accession   NZ_CP123749
Coordinates   1122257..1122859 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 1.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1117257..1127859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX51_RS05830 - 1117340..1117459 (+) 120 WP_000840602.1 hypothetical protein -
  QFX51_RS05835 mreC 1117659..1118501 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  QFX51_RS05840 mreD 1118501..1119031 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  QFX51_RS05845 rplU 1119198..1119506 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  QFX51_RS05850 - 1119512..1119832 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QFX51_RS05855 rpmA 1119844..1120128 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  QFX51_RS05860 obgE 1120483..1121775 (+) 1293 WP_000496100.1 GTPase ObgE -
  QFX51_RS05865 - 1121788..1122243 (+) 456 WP_000368902.1 ACT domain-containing protein -
  QFX51_RS05870 ruvA 1122257..1122859 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  QFX51_RS05875 ruvB 1122891..1123895 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QFX51_RS05880 queA 1123897..1124922 (+) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QFX51_RS05885 tgt 1124945..1126084 (+) 1140 WP_304984663.1 tRNA guanosine(34) transglycosylase Tgt -
  QFX51_RS05890 yajC 1126103..1126363 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=752490 QFX51_RS05870 WP_000271547.1 1122257..1122859(+) (ruvA) [Staphylococcus aureus strain 1.1]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=752490 QFX51_RS05870 WP_000271547.1 1122257..1122859(+) (ruvA) [Staphylococcus aureus strain 1.1]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425