Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OIM94_RS12580 Genome accession   NZ_CP110111
Coordinates   2628343..2628924 (+) Length   193 a.a.
NCBI ID   WP_264607059.1    Uniprot ID   -
Organism   Sphingomonas sp. R1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2623343..2633924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIM94_RS12555 (OIM94_12555) - 2624132..2624431 (+) 300 WP_029623389.1 integration host factor subunit alpha -
  OIM94_RS12560 (OIM94_12560) - 2624440..2624769 (+) 330 WP_264607055.1 MerR family transcriptional regulator -
  OIM94_RS12565 (OIM94_12565) - 2624773..2625306 (-) 534 WP_264607056.1 SixA phosphatase family protein -
  OIM94_RS12570 (OIM94_12570) - 2625303..2628029 (-) 2727 WP_264607057.1 ATP-dependent DNA helicase -
  OIM94_RS12575 (OIM94_12575) - 2628095..2628280 (-) 186 WP_264607058.1 DUF4169 family protein -
  OIM94_RS12580 (OIM94_12580) ssb 2628343..2628924 (+) 582 WP_264607059.1 single-stranded DNA-binding protein Machinery gene
  OIM94_RS12585 (OIM94_12585) - 2628935..2630599 (-) 1665 WP_264607060.1 hypothetical protein -
  OIM94_RS12590 (OIM94_12590) - 2630740..2631204 (+) 465 WP_264607061.1 hypothetical protein -
  OIM94_RS12595 (OIM94_12595) - 2631207..2631503 (-) 297 WP_264607062.1 hypothetical protein -
  OIM94_RS12600 (OIM94_12600) panC 2631591..2632424 (-) 834 WP_264607063.1 pantoate--beta-alanine ligase -
  OIM94_RS12605 (OIM94_12605) - 2632505..2633299 (+) 795 WP_264607065.1 division plane positioning ATPase MipZ -
  OIM94_RS12610 (OIM94_12610) - 2633299..2633562 (+) 264 WP_264607066.1 J domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 19837.54 Da        Isoelectric Point: 5.0338

>NTDB_id=752439 OIM94_RS12580 WP_264607059.1 2628343..2628924(+) (ssb) [Sphingomonas sp. R1]
MAGSVNKVILVGNLGRDPESRAFQNGGKVVELRIATSESWKDRNSGERKEKTEWHTVKIFSEGLANVAERYLRKGSKVYL
EGQLQTRKWQDQSGADRYSTEIVLQGFNAQMVLLDGPGGGQGGGMGGGRSSGGGDDWGADDSFGGGGGGFGGGAPAGRGG
NNFNSGGQRSGGAASGGGFGGGFPDDLDDDVPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=752439 OIM94_RS12580 WP_264607059.1 2628343..2628924(+) (ssb) [Sphingomonas sp. R1]
ATGGCGGGCAGCGTCAACAAGGTGATCCTCGTCGGCAATCTGGGGCGCGACCCCGAGAGCCGGGCGTTCCAGAATGGCGG
CAAGGTGGTCGAGCTGCGCATCGCCACCTCGGAGAGCTGGAAGGATCGCAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACACGGTGAAGATCTTCTCCGAAGGTCTTGCCAATGTCGCCGAGCGCTATCTGCGCAAGGGCAGCAAGGTCTATCTC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGAGCGGCGCGGATCGCTACTCCACCGAGATCGTGCTGCAGGGCTT
CAACGCGCAGATGGTGCTGCTCGATGGTCCTGGCGGCGGCCAGGGCGGCGGCATGGGCGGCGGCCGTAGCAGCGGCGGCG
GCGACGACTGGGGCGCGGACGATTCGTTCGGCGGCGGCGGCGGCGGCTTTGGCGGCGGCGCGCCCGCGGGTCGCGGCGGC
AACAATTTCAACAGCGGCGGTCAGCGCAGCGGCGGTGCGGCAAGCGGCGGCGGCTTCGGCGGCGGCTTCCCGGACGATCT
GGACGACGACGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.714

100

0.497
  ssb Vibrio cholerae strain A1552

47.396

99.482

0.472
  ssb Neisseria gonorrhoeae MS11

36.458

99.482

0.363