Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SFSGTM_RS11570 Genome accession   NZ_AP021881
Coordinates   2354032..2355357 (-) Length   441 a.a.
NCBI ID   WP_162085299.1    Uniprot ID   A0A809SI81
Organism   Sulfuriferula nivalis strain SGTM     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2349032..2360357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFSGTM_RS11545 (SFSGTM_22330) - 2349711..2349944 (-) 234 WP_179954404.1 hypothetical protein -
  SFSGTM_RS11550 (SFSGTM_22340) glyA 2350235..2351482 (+) 1248 WP_162085295.1 serine hydroxymethyltransferase -
  SFSGTM_RS11555 (SFSGTM_22350) nrdR 2351482..2351940 (+) 459 WP_162085296.1 transcriptional regulator NrdR -
  SFSGTM_RS11560 (SFSGTM_22360) ribD 2351943..2353034 (+) 1092 WP_162085297.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  SFSGTM_RS11565 (SFSGTM_22370) - 2353039..2354046 (+) 1008 WP_162085298.1 sodium:calcium antiporter -
  SFSGTM_RS11570 (SFSGTM_22380) pilR 2354032..2355357 (-) 1326 WP_162085299.1 sigma-54 dependent transcriptional regulator Regulator
  SFSGTM_RS11575 (SFSGTM_22390) - 2355351..2356955 (-) 1605 WP_162085300.1 ATP-binding protein -
  SFSGTM_RS11580 (SFSGTM_22400) - 2357094..2357321 (-) 228 WP_162085301.1 PP0621 family protein -
  SFSGTM_RS11585 (SFSGTM_22410) ispB 2357323..2358291 (-) 969 WP_198420551.1 octaprenyl diphosphate synthase -
  SFSGTM_RS11590 (SFSGTM_22420) rplU 2358443..2358754 (+) 312 WP_162085303.1 50S ribosomal protein L21 -
  SFSGTM_RS11595 (SFSGTM_22430) rpmA 2358768..2359031 (+) 264 WP_162085304.1 50S ribosomal protein L27 -
  SFSGTM_RS11600 (SFSGTM_22440) cgtA 2359108..2360184 (+) 1077 WP_162085305.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 48344.74 Da        Isoelectric Point: 4.8747

>NTDB_id=75241 SFSGTM_RS11570 WP_162085299.1 2354032..2355357(-) (pilR) [Sulfuriferula nivalis strain SGTM]
MLDRTVLIIDDESDILELLEISLIRMGLDVVKAETVAQAQAAIEQQKFALCLTDMRLPDGDGLEIVRFIQQAQPTLPVAV
LTAHGNTDNAVTALKAGAFDYINKPVTLEQLRALVKSALKMPENTTLAMQGLVGNSPAMQQARELIGKLARTQAPVYITG
ESGSGKELAARLIHQQSNRAAMPFVPVNCGAIPENLMESEFFGYKKGAFTGADSERDGFFQAAQGGTIFLDEVADLPLAM
QVKLLRVIQEKKVRKLGSSVEEPIDVRIISATHQNLAQCVEAGRFRQDLFYRLNVISLKMPALRDMREDVASVAQTLLTR
LAQEAGMPVPVLNASALTALAQYDFPGNVRELENILERALALTSGDSIAATDLHLTPVVDELLPERVAGAKWPLQDYLDG
VEREAIEEALVQTRYNKTAAAKLLGITFRALRYRLERLNIE

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=75241 SFSGTM_RS11570 WP_162085299.1 2354032..2355357(-) (pilR) [Sulfuriferula nivalis strain SGTM]
ATGTTAGATCGTACAGTACTCATTATCGATGATGAGTCGGATATTTTGGAATTGCTAGAAATCAGTTTAATTCGTATGGG
TTTAGACGTGGTTAAAGCTGAAACGGTTGCGCAAGCACAAGCGGCCATAGAACAGCAGAAATTTGCACTATGTCTGACGG
ACATGCGTTTGCCTGATGGTGATGGTTTGGAAATTGTACGTTTTATTCAACAGGCACAACCTACGTTGCCTGTGGCAGTG
TTAACCGCGCACGGCAATACCGATAATGCGGTGACGGCTTTGAAAGCGGGTGCATTTGATTATATTAATAAACCGGTGAC
GCTGGAGCAATTGCGGGCATTAGTTAAATCAGCGCTGAAAATGCCTGAGAACACTACTTTAGCGATGCAGGGGCTGGTGG
GCAATTCTCCTGCAATGCAGCAGGCACGTGAATTAATAGGTAAATTGGCGCGTACTCAGGCGCCTGTTTATATTACCGGA
GAGTCGGGTAGTGGTAAGGAGCTGGCAGCGCGTTTGATACATCAACAAAGTAATCGTGCAGCTATGCCGTTTGTGCCAGT
GAACTGCGGTGCTATACCAGAAAATTTGATGGAATCAGAATTTTTTGGCTATAAAAAGGGCGCATTTACCGGTGCCGATA
GCGAGCGTGATGGCTTCTTTCAGGCAGCGCAAGGTGGCACGATATTTCTGGATGAAGTCGCAGATTTGCCGTTGGCTATG
CAAGTGAAGCTGCTGCGTGTGATACAGGAAAAGAAAGTGCGTAAGTTGGGTAGCAGTGTGGAAGAGCCTATCGATGTACG
CATTATCAGTGCTACACATCAAAATCTGGCGCAATGTGTGGAAGCGGGTCGTTTCCGTCAGGATTTATTTTATCGCTTGA
ATGTGATTAGCCTGAAAATGCCTGCTTTGCGCGATATGCGTGAAGATGTGGCCAGTGTGGCGCAAACCCTGTTAACGCGA
TTGGCGCAGGAGGCAGGTATGCCTGTGCCTGTGCTGAATGCTTCTGCTTTAACCGCATTGGCACAATATGATTTTCCAGG
CAATGTTCGAGAGTTGGAAAATATACTGGAACGGGCGTTGGCGCTGACCTCTGGTGACAGTATCGCTGCAACTGATTTGC
ACTTAACACCAGTGGTGGATGAGTTGTTGCCTGAGCGTGTGGCAGGCGCGAAGTGGCCGTTGCAGGACTATCTGGATGGC
GTAGAACGCGAGGCGATAGAAGAGGCTTTAGTGCAGACGCGTTACAATAAAACTGCAGCGGCGAAATTGTTAGGTATTAC
TTTTCGCGCACTGCGGTATCGTTTAGAGCGATTAAATATAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(401-437)

Sigma-54 interaction domain (Sigma54_activat)

(132-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809SI81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.25

100

0.571
  pilR Acinetobacter baumannii strain A118

45.752

100

0.476
  luxO Vibrio cholerae strain A1552

36.08

100

0.367

Multiple sequence alignment