Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   OKW88_RS12760 Genome accession   NZ_CP110105
Coordinates   2493463..2493582 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain CF03     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2488463..2498582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS12735 (OKW88_12715) albG 2488627..2489328 (+) 702 WP_015250988.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  OKW88_RS12740 (OKW88_12720) ywhL 2489334..2490710 (-) 1377 WP_015250987.1 YncE family protein -
  OKW88_RS12745 (OKW88_12725) ywhK 2490749..2492104 (-) 1356 WP_342006500.1 YncE family protein -
  OKW88_RS12750 - 2492101..2492331 (-) 231 Protein_2516 hypothetical protein -
  OKW88_RS12755 (OKW88_12730) rapF 2492334..2493479 (+) 1146 WP_015250985.1 response regulator aspartate phosphatase RapF Regulator
  OKW88_RS12760 (OKW88_12735) phrF 2493463..2493582 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  OKW88_RS12765 (OKW88_12740) - 2493680..2494141 (+) 462 Protein_2519 YbaK/EbsC family protein -
  OKW88_RS12770 (OKW88_12745) speB 2494172..2495044 (-) 873 WP_342006499.1 agmatinase -
  OKW88_RS12775 (OKW88_12750) speE 2495105..2495935 (-) 831 WP_003227543.1 spermidine synthase -
  OKW88_RS12780 (OKW88_12755) pbpG 2496137..2498212 (+) 2076 WP_029726084.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=752292 OKW88_RS12760 WP_009968329.1 2493463..2493582(+) (phrF) [Bacillus subtilis strain CF03]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=752292 OKW88_RS12760 WP_009968329.1 2493463..2493582(+) (phrF) [Bacillus subtilis strain CF03]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487