Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   OKW88_RS11695 Genome accession   NZ_CP110105
Coordinates   2286529..2287686 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain CF03     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2281529..2292686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS11665 (OKW88_11650) yvyF 2281782..2282201 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  OKW88_RS11670 (OKW88_11655) comFC 2282275..2282997 (-) 723 WP_342006515.1 comF operon protein ComFC Machinery gene
  OKW88_RS11675 (OKW88_11660) comFB 2282961..2283257 (-) 297 WP_015483764.1 late competence protein ComFB -
  OKW88_RS11680 (OKW88_11665) comFA 2283317..2284708 (-) 1392 WP_217017165.1 ATP-dependent helicase ComFA Machinery gene
  OKW88_RS11685 (OKW88_11670) fakBA 2284814..2285659 (-) 846 WP_003227986.1 DegV family protein -
  OKW88_RS11690 (OKW88_11675) degU 2285757..2286446 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OKW88_RS11695 (OKW88_11680) degS 2286529..2287686 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OKW88_RS11700 (OKW88_11685) yvyE 2287903..2288556 (+) 654 WP_003227979.1 YigZ family protein -
  OKW88_RS11705 (OKW88_11690) tagV 2288556..2289731 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  OKW88_RS11710 (OKW88_11695) tagO 2289804..2290880 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  OKW88_RS11715 (OKW88_11700) tuaH 2291025..2292218 (-) 1194 WP_003243252.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=752287 OKW88_RS11695 WP_003227983.1 2286529..2287686(-) (degS) [Bacillus subtilis strain CF03]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=752287 OKW88_RS11695 WP_003227983.1 2286529..2287686(-) (degS) [Bacillus subtilis strain CF03]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAGGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1