Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OKW88_RS11680 Genome accession   NZ_CP110105
Coordinates   2283317..2284708 (-) Length   463 a.a.
NCBI ID   WP_217017165.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2278317..2289708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS11645 (OKW88_11630) flgL 2278488..2279384 (-) 897 WP_342006517.1 flagellar hook-associated protein FlgL -
  OKW88_RS11650 (OKW88_11635) flgK 2279395..2280918 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  OKW88_RS11655 (OKW88_11640) flgN 2280937..2281419 (-) 483 WP_342006516.1 flagellar protein FlgN -
  OKW88_RS11660 (OKW88_11645) flgM 2281435..2281701 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  OKW88_RS11665 (OKW88_11650) yvyF 2281782..2282201 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  OKW88_RS11670 (OKW88_11655) comFC 2282275..2282997 (-) 723 WP_342006515.1 comF operon protein ComFC Machinery gene
  OKW88_RS11675 (OKW88_11660) comFB 2282961..2283257 (-) 297 WP_015483764.1 late competence protein ComFB -
  OKW88_RS11680 (OKW88_11665) comFA 2283317..2284708 (-) 1392 WP_217017165.1 ATP-dependent helicase ComFA Machinery gene
  OKW88_RS11685 (OKW88_11670) fakBA 2284814..2285659 (-) 846 WP_003227986.1 DegV family protein -
  OKW88_RS11690 (OKW88_11675) degU 2285757..2286446 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OKW88_RS11695 (OKW88_11680) degS 2286529..2287686 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OKW88_RS11700 (OKW88_11685) yvyE 2287903..2288556 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52656.70 Da        Isoelectric Point: 9.8572

>NTDB_id=752285 OKW88_RS11680 WP_217017165.1 2283317..2284708(-) (comFA) [Bacillus subtilis strain CF03]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELVPRLKAAFQGADISALYGGSDDKGRLSPIMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHIKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=752285 OKW88_RS11680 WP_217017165.1 2283317..2284708(-) (comFA) [Bacillus subtilis strain CF03]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCATGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGTTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGATTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATATAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(327-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983