Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OKW88_RS11690 Genome accession   NZ_CP110105
Coordinates   2285757..2286446 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain CF03     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2280757..2291446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS11655 (OKW88_11640) flgN 2280937..2281419 (-) 483 WP_342006516.1 flagellar protein FlgN -
  OKW88_RS11660 (OKW88_11645) flgM 2281435..2281701 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  OKW88_RS11665 (OKW88_11650) yvyF 2281782..2282201 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  OKW88_RS11670 (OKW88_11655) comFC 2282275..2282997 (-) 723 WP_342006515.1 comF operon protein ComFC Machinery gene
  OKW88_RS11675 (OKW88_11660) comFB 2282961..2283257 (-) 297 WP_015483764.1 late competence protein ComFB -
  OKW88_RS11680 (OKW88_11665) comFA 2283317..2284708 (-) 1392 WP_217017165.1 ATP-dependent helicase ComFA Machinery gene
  OKW88_RS11685 (OKW88_11670) fakBA 2284814..2285659 (-) 846 WP_003227986.1 DegV family protein -
  OKW88_RS11690 (OKW88_11675) degU 2285757..2286446 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OKW88_RS11695 (OKW88_11680) degS 2286529..2287686 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  OKW88_RS11700 (OKW88_11685) yvyE 2287903..2288556 (+) 654 WP_003227979.1 YigZ family protein -
  OKW88_RS11705 (OKW88_11690) tagV 2288556..2289731 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  OKW88_RS11710 (OKW88_11695) tagO 2289804..2290880 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=752286 OKW88_RS11690 WP_003219701.1 2285757..2286446(-) (degU) [Bacillus subtilis strain CF03]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=752286 OKW88_RS11690 WP_003219701.1 2285757..2286446(-) (degU) [Bacillus subtilis strain CF03]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1