Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OCX17_RS08260 Genome accession   NZ_AP024732
Coordinates   1702980..1703582 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain 59621     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1697980..1708582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX17_RS08240 secDF 1699629..1701908 (-) 2280 WP_000749795.1 protein translocase subunit SecDF -
  OCX17_RS08245 yajC 1702183..1702443 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  OCX17_RS08250 - 1702462..1702575 (-) 114 Protein_1625 hypothetical protein -
  OCX17_RS08255 - 1702592..1702948 (-) 357 Protein_1626 AAA family ATPase -
  OCX17_RS08260 ruvA 1702980..1703582 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  OCX17_RS08265 - 1703596..1704051 (-) 456 WP_000368902.1 ACT domain-containing protein -
  OCX17_RS08270 obgE 1704064..1705356 (-) 1293 WP_000496100.1 GTPase ObgE -
  OCX17_RS08275 rpmA 1705841..1706125 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  OCX17_RS08280 - 1706137..1706457 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  OCX17_RS08285 rplU 1706463..1706771 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  OCX17_RS08290 mreD 1707259..1707789 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=75214 OCX17_RS08260 WP_000271550.1 1702980..1703582(-) (ruvA) [Staphylococcus aureus strain 59621]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=75214 OCX17_RS08260 WP_000271550.1 1702980..1703582(-) (ruvA) [Staphylococcus aureus strain 59621]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43

Multiple sequence alignment