NTDB

Overview

Name	ssb	Type	Machinery gene
Locus tag	OLM02_RS12005	Genome accession	NZ_CP110068
Coordinates	2471717..2472244 (-)	Length	175 a.a.
NCBI ID	WP_002402238.1	Uniprot ID	-
Organism	Enterococcus faecalis strain BE13
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2466717..2477244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OLM02_RS11960 (OLM02_11960)	-	2466914..2467630 (-)	717	WP_002364503.1	hypothetical protein	-
OLM02_RS11965 (OLM02_11965)	-	2467878..2468285 (-)	408	WP_002416043.1	transcriptional regulator	-
OLM02_RS11970 (OLM02_11970)	-	2468286..2468495 (-)	210	WP_002402424.1	hypothetical protein	-
OLM02_RS11975 (OLM02_11975)	-	2468691..2468909 (-)	219	Protein_2335	ASCH/PUA domain-containing protein	-
OLM02_RS11980 (OLM02_11980)	-	2468944..2469321 (-)	378	WP_015543837.1	YopX family protein	-
OLM02_RS11985 (OLM02_11985)	-	2469344..2469784 (-)	441	WP_002370000.1	restriction endonuclease subunit S	-
OLM02_RS11990 (OLM02_11990)	-	2469781..2471097 (-)	1317	WP_021732910.1	N-6 DNA methylase	-
OLM02_RS11995 (OLM02_11995)	-	2471150..2471356 (-)	207	WP_002395813.1	hypothetical protein	-
OLM02_RS12000 (OLM02_12000)	-	2471376..2471705 (-)	330	WP_015543839.1	hypothetical protein	-
OLM02_RS12005 (OLM02_12005)	ssb	2471717..2472244 (-)	528	WP_002402238.1	single-stranded DNA-binding protein	Machinery gene
OLM02_RS12010 (OLM02_12010)	-	2472234..2472542 (-)	309	WP_002381633.1	MazG-like family protein	-
OLM02_RS12015 (OLM02_12015)	-	2472542..2473393 (-)	852	WP_033780568.1	hypothetical protein	-
OLM02_RS12020 (OLM02_12020)	-	2473413..2474054 (-)	642	WP_002401998.1	putative HNHc nuclease	-
OLM02_RS12025 (OLM02_12025)	-	2474051..2474989 (-)	939	WP_015543840.1	DUF1351 domain-containing protein	-
OLM02_RS12030 (OLM02_12030)	-	2474989..2475732 (-)	744	WP_002401996.1	ERF family protein	-
OLM02_RS12035 (OLM02_12035)	-	2475932..2476105 (-)	174	WP_002404922.1	hypothetical protein	-
OLM02_RS12040 (OLM02_12040)	-	2476117..2476302 (-)	186	WP_002395692.1	hypothetical protein	-
OLM02_RS12045 (OLM02_12045)	-	2476313..2477023 (-)	711	WP_202227000.1	Rha family transcriptional regulator	-

Sequence

Protein

Download Length: 175 a.a. Molecular weight: 19385.28 Da Isoelectric Point: 4.5778

                                >NTDB_id=751977 OLM02_RS12005 WP_002402238.1 2471717..2472244(-) (ssb) [Enterococcus faecalis strain BE13]

MINNVVLVGRLTKDLDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYTRKGTLLGVVGRIQTR

NYDNQQGQRVYVTEVVCESFQLLEPKSANENRNSIQMSQNDGTSVQNNFEGNYATNQNKGLNQQNNSQQMSFGGDVDPFA

GAGNSIDISDDDLPF

Nucleotide

Download Length: 528 bp

                                >NTDB_id=751977 OLM02_RS12005 WP_002402238.1 2471717..2472244(-) (ssb) [Enterococcus faecalis strain BE13]

ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCTTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG

AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT

GGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT

AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGCCAAAAAG

CGCCAATGAGAATAGAAATAGCATTCAGATGTCACAGAATGACGGTACAAGCGTTCAAAACAATTTCGAGGGTAATTATG

CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA

GGTGCAGGTAATTCAATCGACATTAGCGATGATGATCTGCCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssb	Latilactobacillus sakei subsp. sakei 23K	57.979	100	0.623
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.714	100	0.577
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.434	60.571	0.36

Detailed information NTG0751977