Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | OLL92_RS04490 | Genome accession | NZ_CP110059 |
| Coordinates | 902473..903000 (+) | Length | 175 a.a. |
| NCBI ID | WP_142960522.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain BE16 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 891403..939322 | 902473..903000 | within | 0 |
Gene organization within MGE regions
Location: 891403..939322
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLL92_RS04380 (OLL92_04380) | - | 891403..892584 (-) | 1182 | WP_231411508.1 | site-specific integrase | - |
| OLL92_RS04385 (OLL92_04385) | - | 892760..893443 (-) | 684 | WP_141442172.1 | hypothetical protein | - |
| OLL92_RS04390 (OLL92_04390) | - | 893533..893766 (+) | 234 | WP_002367290.1 | hypothetical protein | - |
| OLL92_RS04395 (OLL92_04395) | - | 893791..894054 (-) | 264 | Protein_844 | toxin | - |
| OLL92_RS04400 (OLL92_04400) | - | 894162..894680 (-) | 519 | WP_002404532.1 | hypothetical protein | - |
| OLL92_RS04405 (OLL92_04405) | - | 894768..895190 (-) | 423 | WP_049098636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| OLL92_RS04410 (OLL92_04410) | - | 895208..895528 (-) | 321 | WP_002404534.1 | helix-turn-helix domain-containing protein | - |
| OLL92_RS04415 (OLL92_04415) | - | 895824..896006 (+) | 183 | WP_002404535.1 | hypothetical protein | - |
| OLL92_RS04420 (OLL92_04420) | - | 896019..896288 (+) | 270 | WP_002365131.1 | hypothetical protein | - |
| OLL92_RS04425 (OLL92_04425) | - | 896322..896528 (+) | 207 | WP_010822644.1 | hypothetical protein | - |
| OLL92_RS04430 (OLL92_04430) | - | 896533..896688 (+) | 156 | WP_010822645.1 | hypothetical protein | - |
| OLL92_RS04435 (OLL92_04435) | - | 896678..896887 (-) | 210 | WP_142960439.1 | hypothetical protein | - |
| OLL92_RS04440 (OLL92_04440) | - | 897066..897488 (-) | 423 | WP_010828994.1 | hypothetical protein | - |
| OLL92_RS04445 (OLL92_04445) | - | 897568..898278 (+) | 711 | WP_104884670.1 | Rha family transcriptional regulator | - |
| OLL92_RS04450 (OLL92_04450) | - | 898289..898474 (+) | 186 | WP_002357337.1 | hypothetical protein | - |
| OLL92_RS04455 (OLL92_04455) | - | 898486..898659 (+) | 174 | WP_002406302.1 | hypothetical protein | - |
| OLL92_RS04460 (OLL92_04460) | - | 898857..898979 (+) | 123 | WP_002399179.1 | hypothetical protein | - |
| OLL92_RS04465 (OLL92_04465) | - | 898963..899442 (+) | 480 | WP_002381628.1 | siphovirus Gp157 family protein | - |
| OLL92_RS04470 (OLL92_04470) | - | 899454..900470 (+) | 1017 | WP_002365157.1 | AAA family ATPase | - |
| OLL92_RS04475 (OLL92_04475) | - | 900475..901116 (+) | 642 | WP_010783684.1 | putative HNHc nuclease | - |
| OLL92_RS04480 (OLL92_04480) | - | 901184..901606 (+) | 423 | WP_264547791.1 | hypothetical protein | - |
| OLL92_RS04485 (OLL92_04485) | - | 901626..902468 (+) | 843 | WP_264547810.1 | DNA replication protein | - |
| OLL92_RS04490 (OLL92_04490) | ssb | 902473..903000 (+) | 528 | WP_142960522.1 | single-stranded DNA-binding protein | Machinery gene |
| OLL92_RS04495 (OLL92_04495) | - | 903012..903341 (+) | 330 | WP_174098288.1 | hypothetical protein | - |
| OLL92_RS04500 (OLL92_04500) | - | 903361..903567 (+) | 207 | WP_002393799.1 | hypothetical protein | - |
| OLL92_RS04505 (OLL92_04505) | - | 903620..904384 (+) | 765 | WP_126268785.1 | site-specific DNA-methyltransferase | - |
| OLL92_RS04510 (OLL92_04510) | - | 904428..904790 (+) | 363 | WP_085390508.1 | YopX family protein | - |
| OLL92_RS04515 (OLL92_04515) | - | 904791..905144 (+) | 354 | WP_264547792.1 | hypothetical protein | - |
| OLL92_RS04520 (OLL92_04520) | - | 905314..905505 (+) | 192 | WP_264547793.1 | hypothetical protein | - |
| OLL92_RS04525 (OLL92_04525) | - | 905505..905681 (+) | 177 | WP_185933018.1 | hypothetical protein | - |
| OLL92_RS04530 (OLL92_04530) | - | 905720..906226 (+) | 507 | WP_264547794.1 | YopX family protein | - |
| OLL92_RS04535 (OLL92_04535) | - | 906223..906417 (+) | 195 | WP_174116374.1 | hypothetical protein | - |
| OLL92_RS04540 (OLL92_04540) | - | 906414..906662 (+) | 249 | WP_174116373.1 | hypothetical protein | - |
| OLL92_RS04545 (OLL92_04545) | - | 906655..906861 (+) | 207 | WP_174116372.1 | hypothetical protein | - |
| OLL92_RS04550 (OLL92_04550) | - | 906858..907403 (+) | 546 | WP_264547795.1 | DUF1642 domain-containing protein | - |
| OLL92_RS04555 (OLL92_04555) | - | 907404..907565 (+) | 162 | WP_162837175.1 | hypothetical protein | - |
| OLL92_RS04560 (OLL92_04560) | - | 907565..907756 (+) | 192 | WP_264547796.1 | hypothetical protein | - |
| OLL92_RS04565 (OLL92_04565) | - | 907901..908317 (+) | 417 | WP_264547797.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| OLL92_RS04575 (OLL92_04575) | - | 908849..909463 (+) | 615 | WP_264547798.1 | hypothetical protein | - |
| OLL92_RS04580 (OLL92_04580) | - | 910067..910528 (+) | 462 | WP_002414515.1 | terminase small subunit | - |
| OLL92_RS04585 (OLL92_04585) | - | 910515..911792 (+) | 1278 | WP_173944846.1 | PBSX family phage terminase large subunit | - |
| OLL92_RS04590 (OLL92_04590) | - | 911805..913274 (+) | 1470 | WP_064687108.1 | phage portal protein | - |
| OLL92_RS04595 (OLL92_04595) | - | 913252..914298 (+) | 1047 | WP_202518409.1 | phage head morphogenesis protein | - |
| OLL92_RS04600 (OLL92_04600) | - | 914301..914621 (+) | 321 | WP_002414520.1 | hypothetical protein | - |
| OLL92_RS04605 (OLL92_04605) | - | 914626..914922 (+) | 297 | WP_164548112.1 | hypothetical protein | - |
| OLL92_RS04610 (OLL92_04610) | - | 915091..915717 (+) | 627 | WP_264547799.1 | DUF4355 domain-containing protein | - |
| OLL92_RS04615 (OLL92_04615) | - | 915731..916633 (+) | 903 | WP_264547800.1 | DUF5309 domain-containing protein | - |
| OLL92_RS04620 (OLL92_04620) | - | 916657..916893 (+) | 237 | WP_002402418.1 | hypothetical protein | - |
| OLL92_RS04625 (OLL92_04625) | - | 916902..917246 (+) | 345 | WP_002395886.1 | hypothetical protein | - |
| OLL92_RS04630 (OLL92_04630) | - | 917243..917620 (+) | 378 | WP_002404932.1 | hypothetical protein | - |
| OLL92_RS04635 (OLL92_04635) | - | 917613..918011 (+) | 399 | WP_002402415.1 | HK97 gp10 family phage protein | - |
| OLL92_RS04640 (OLL92_04640) | - | 918015..918389 (+) | 375 | WP_016634615.1 | DUF6838 family protein | - |
| OLL92_RS04645 (OLL92_04645) | - | 918390..919232 (+) | 843 | WP_202531045.1 | major tail protein | - |
| OLL92_RS04650 (OLL92_04650) | gpG | 919285..919638 (+) | 354 | WP_002364485.1 | phage tail assembly chaperone G | - |
| OLL92_RS04655 (OLL92_04655) | - | 919887..922784 (+) | 2898 | WP_264547811.1 | tape measure protein | - |
| OLL92_RS04660 (OLL92_04660) | - | 922774..923508 (+) | 735 | WP_002364482.1 | tail protein | - |
| OLL92_RS04665 (OLL92_04665) | - | 923490..926213 (+) | 2724 | WP_264547801.1 | phage tail spike protein | - |
| OLL92_RS04670 (OLL92_04670) | - | 926228..927136 (+) | 909 | WP_264547802.1 | phage baseplate upper protein | - |
| OLL92_RS04675 (OLL92_04675) | - | 927129..927446 (+) | 318 | WP_021732959.1 | hypothetical protein | - |
| OLL92_RS04680 (OLL92_04680) | - | 927439..927756 (+) | 318 | WP_021732960.1 | hypothetical protein | - |
| OLL92_RS04685 (OLL92_04685) | - | 927756..928268 (+) | 513 | WP_264547803.1 | hypothetical protein | - |
| OLL92_RS04690 (OLL92_04690) | - | 928283..928657 (+) | 375 | WP_173944875.1 | hypothetical protein | - |
| OLL92_RS04695 (OLL92_04695) | - | 928657..928779 (+) | 123 | WP_002395770.1 | XkdX family protein | - |
| OLL92_RS04700 (OLL92_04700) | - | 928785..928994 (+) | 210 | WP_029682685.1 | BhlA/UviB family holin-like peptide | - |
| OLL92_RS04705 (OLL92_04705) | - | 929036..930139 (+) | 1104 | WP_264547804.1 | SH3 domain-containing protein | - |
| OLL92_RS04715 (OLL92_04715) | - | 930646..930897 (+) | 252 | WP_002389274.1 | hypothetical protein | - |
| OLL92_RS04720 (OLL92_04720) | - | 931153..932217 (+) | 1065 | WP_002362350.1 | FUSC family protein | - |
| OLL92_RS04725 (OLL92_04725) | - | 932922..933302 (+) | 381 | WP_088775801.1 | transcriptional regulator | - |
| OLL92_RS04730 (OLL92_04730) | - | 933395..934522 (+) | 1128 | WP_002362348.1 | lysozyme | - |
| OLL92_RS14705 | - | 935103..935283 (-) | 181 | Protein_910 | hypothetical protein | - |
| OLL92_RS04735 (OLL92_04735) | - | 935537..937090 (-) | 1554 | WP_025186367.1 | membrane protein | - |
| OLL92_RS04740 (OLL92_04740) | - | 937181..937756 (-) | 576 | WP_002356327.1 | DUF805 domain-containing protein | - |
| OLL92_RS04745 (OLL92_04745) | - | 937922..938692 (+) | 771 | WP_002356329.1 | alpha/beta fold hydrolase | - |
| OLL92_RS04750 (OLL92_04750) | - | 938780..939322 (+) | 543 | WP_002362346.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19435.32 Da Isoelectric Point: 4.6228
>NTDB_id=751887 OLL92_RS04490 WP_142960522.1 902473..903000(+) (ssb) [Enterococcus faecalis strain BE16]
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSIQTSQDDSTSVQNDFEGKYTTNQNKGLNQQNNSKQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSIQTSQDDSTSVQNDFEGKYTTNQNKGLNQQNNSKQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=751887 OLL92_RS04490 WP_142960522.1 902473..903000(+) (ssb) [Enterococcus faecalis strain BE16]
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCAGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTGGAATCAAAAAG
TACAAACGAGAATAGAAATAGCATTCAGACGTCACAGGATGACAGTACAAGCGTTCAAAATGATTTCGAGGGTAAATATA
CCACAAATCAAAACAAAGGCTTAAATCAGCAAAATAATAGCAAACAAATGTCGTTTGGCGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGACGATGATCTACCGTTCTAG
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCAGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGCAAAGGAACATTATTAGGAGTTGTTGGAAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTGGAATCAAAAAG
TACAAACGAGAATAGAAATAGCATTCAGACGTCACAGGATGACAGTACAAGCGTTCAAAATGATTTCGAGGGTAAATATA
CCACAAATCAAAACAAAGGCTTAAATCAGCAAAATAATAGCAAACAAATGTCGTTTGGCGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGACGATGATCTACCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.659 |
100 |
0.6 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56 |
100 |
0.56 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |