Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QFX56_RS07795 Genome accession   NZ_CP123738
Coordinates   1632836..1633438 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain 2.6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1627836..1638438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX56_RS07775 yajC 1629332..1629592 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  QFX56_RS07780 tgt 1629611..1630750 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QFX56_RS07785 queA 1630773..1631798 (-) 1026 WP_001019167.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QFX56_RS07790 ruvB 1631800..1632804 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QFX56_RS07795 ruvA 1632836..1633438 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  QFX56_RS07800 - 1633452..1633907 (-) 456 WP_000368902.1 ACT domain-containing protein -
  QFX56_RS07805 obgE 1633920..1635212 (-) 1293 WP_000496100.1 GTPase ObgE -
  QFX56_RS07810 rpmA 1635566..1635850 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  QFX56_RS07815 - 1635862..1636182 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QFX56_RS07820 rplU 1636188..1636496 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  QFX56_RS07825 mreD 1636789..1637319 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  QFX56_RS07830 mreC 1637319..1638161 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=751567 QFX56_RS07795 WP_000271547.1 1632836..1633438(-) (ruvA) [Staphylococcus aureus strain 2.6]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=751567 QFX56_RS07795 WP_000271547.1 1632836..1633438(-) (ruvA) [Staphylococcus aureus strain 2.6]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425