Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OCX16_RS08550 Genome accession   NZ_AP024730
Coordinates   1746965..1747567 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain 59574     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741965..1752567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX16_RS08530 yajC 1743461..1743721 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  OCX16_RS08535 tgt 1743740..1744879 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  OCX16_RS08540 queA 1744902..1745927 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  OCX16_RS08545 ruvB 1745929..1746933 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OCX16_RS08550 ruvA 1746965..1747567 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  OCX16_RS08555 - 1747581..1748036 (-) 456 WP_000368902.1 ACT domain-containing protein -
  OCX16_RS08560 obgE 1748049..1749341 (-) 1293 WP_000496100.1 GTPase ObgE -
  OCX16_RS08565 rpmA 1749826..1750110 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  OCX16_RS08570 - 1750122..1750442 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  OCX16_RS08575 rplU 1750448..1750756 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  OCX16_RS08580 mreD 1751244..1751774 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=75129 OCX16_RS08550 WP_000271550.1 1746965..1747567(-) (ruvA) [Staphylococcus aureus strain 59574]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=75129 OCX16_RS08550 WP_000271550.1 1746965..1747567(-) (ruvA) [Staphylococcus aureus strain 59574]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43

Multiple sequence alignment