Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Vgang_RS10955 Genome accession   NZ_AP021869
Coordinates   2357955..2358587 (+) Length   210 a.a.
NCBI ID   WP_086982043.1    Uniprot ID   -
Organism   Vibrio gangliei strain DSM 104291     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2352955..2363587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vgang_RS10930 kefG 2352960..2353604 (-) 645 WP_105902900.1 glutathione-regulated potassium-efflux system ancillary protein KefG -
  Vgang_RS10935 - 2354058..2355965 (+) 1908 WP_105902899.1 ABC transporter ATP-binding protein -
  Vgang_RS10940 - 2355967..2356437 (+) 471 WP_105902898.1 TIGR02444 family protein -
  Vgang_RS10945 - 2356516..2356731 (+) 216 WP_105902897.1 YheU family protein -
  Vgang_RS10950 - 2356841..2357710 (+) 870 WP_105902896.1 phosphoribulokinase -
  Vgang_RS10955 crp 2357955..2358587 (+) 633 WP_086982043.1 cAMP-activated global transcriptional regulator CRP Regulator
  Vgang_RS10960 - 2358927..2360132 (-) 1206 WP_105902895.1 aromatic amino acid transport family protein -
  Vgang_RS10965 pyrE 2360360..2361001 (-) 642 WP_105902894.1 orotate phosphoribosyltransferase -
  Vgang_RS10970 rph 2361125..2361853 (-) 729 WP_105902893.1 ribonuclease PH -
  Vgang_RS10975 - 2362028..2362894 (+) 867 WP_105902892.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23637.46 Da        Isoelectric Point: 7.8383

>NTDB_id=75111 Vgang_RS10955 WP_086982043.1 2357955..2358587(+) (crp) [Vibrio gangliei strain DSM 104291]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMAKRLQITSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=75111 Vgang_RS10955 WP_086982043.1 2357955..2358587(+) (crp) [Vibrio gangliei strain DSM 104291]
ATGGTTCTAGGTAAACCTCAAACAGACCCAACACTAGAGTGGTTTCTATCACACTGCCACATCCACAAGTACCCTTCAAA
AAGTACTTTGATCCATGCTGGCGAAAAAGCAGAAACCTTATACTACATCGTTAAGGGTTCAGTAGCGGTATTAATCAAGG
ATGAAGAAGGCAAAGAAATGATCTTGTCTTACTTGAACCAAGGTGACTTCATCGGTGAATTAGGCCTATTCGAAGAAGAC
CAAGAACGTACTGCTTGGGTCCGTGCAAAATCGCCTTGTGAAGTCGCTGAAATTTCATTTAAGAAGTTCCGCCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGTCTTTCAGGCCAAATGGCAAAACGTCTGCAAATCACTAGCCAAAAAGTTGGCG
ACTTAGCCTTCCTAGACGTAACAGGTCGTATCGCACAGACTTTGTTGAACCTAGCAAAACAACCGGATGCCATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGCCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGCAT
CTTGAAGATGCTAGAAGAGCAAAACCTGATTTCTGCACACGGTAAAACTATCGTGGTATACGGAACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment