Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OHM52_RS02600 Genome accession   NZ_CP109937
Coordinates   521246..521740 (+) Length   164 a.a.
NCBI ID   WP_024417776.1    Uniprot ID   A0AAJ5IUS1
Organism   Streptococcus suis strain TRG6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 516246..526740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM52_RS02575 (OHM52_02575) - 517037..517639 (+) 603 WP_043032978.1 histidine phosphatase family protein -
  OHM52_RS02580 (OHM52_02580) - 517669..518151 (+) 483 Protein_471 histidine phosphatase family protein -
  OHM52_RS02585 (OHM52_02585) - 518260..519699 (+) 1440 WP_024417777.1 6-phospho-beta-glucosidase -
  OHM52_RS02590 (OHM52_02590) - 519783..520772 (+) 990 WP_014736331.1 lipoate--protein ligase -
  OHM52_RS02595 (OHM52_02595) rpsF 520944..521234 (+) 291 WP_002942403.1 30S ribosomal protein S6 -
  OHM52_RS02600 (OHM52_02600) ssbA 521246..521740 (+) 495 WP_024417776.1 single-stranded DNA-binding protein Machinery gene
  OHM52_RS02605 (OHM52_02605) rpsR 521773..522012 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  OHM52_RS02610 (OHM52_02610) - 522247..522903 (-) 657 WP_012027735.1 DUF1129 domain-containing protein -
  OHM52_RS02615 (OHM52_02615) - 522919..523863 (-) 945 WP_002939248.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18130.92 Da        Isoelectric Point: 4.7294

>NTDB_id=750872 OHM52_RS02600 WP_024417776.1 521246..521740(+) (ssbA) [Streptococcus suis strain TRG6]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPSQSIPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=750872 OHM52_RS02600 WP_024417776.1 521246..521740(+) (ssbA) [Streptococcus suis strain TRG6]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGATAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTTCACAATCTATACCAAACTTCGCTCGAGAAGAGAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.573
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366