Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PALA55_RS24635 Genome accession   NZ_CP109918
Coordinates   5291306..5292643 (+) Length   445 a.a.
NCBI ID   WP_017002067.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA55     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5286306..5297643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA55_RS24610 (PALA55_04871) pgeF 5286449..5287177 (-) 729 WP_003102588.1 peptidoglycan editing factor PgeF -
  PALA55_RS24615 (PALA55_04872) rluD 5287174..5288136 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PALA55_RS24620 (PALA55_04873) - 5288282..5289307 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  PALA55_RS24625 (PALA55_04874) - 5289464..5289709 (+) 246 WP_003102591.1 PP0621 family protein -
  PALA55_RS24630 (PALA55_04875) pilS 5289699..5291291 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  PALA55_RS24635 (PALA55_04876) pilR 5291306..5292643 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  PALA55_RS24640 (PALA55_04877) thiO 5292689..5293783 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  PALA55_RS24645 (PALA55_04878) - 5293918..5294427 (+) 510 WP_023088572.1 GspH/FimT family pseudopilin -
  PALA55_RS24650 (PALA55_04879) - 5294533..5295039 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA55_RS24655 (PALA55_04880) pilV 5295030..5295587 (+) 558 WP_003102600.1 type 4a pilus minor pilin PilV Machinery gene
  PALA55_RS24660 (PALA55_04881) pilW 5295584..5296408 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA55_RS24665 (PALA55_04882) pilX 5296405..5296992 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49727.02 Da        Isoelectric Point: 5.8654

>NTDB_id=750587 PALA55_RS24635 WP_017002067.1 5291306..5292643(+) (pilR) [Pseudomonas aeruginosa strain PALA55]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLARESFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=750587 PALA55_RS24635 WP_017002067.1 5291306..5292643(+) (pilR) [Pseudomonas aeruginosa strain PALA55]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGTCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384