Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OK026_RS13370 Genome accession   NZ_CP109905
Coordinates   2960605..2961936 (+) Length   443 a.a.
NCBI ID   WP_043636466.1    Uniprot ID   -
Organism   Chromobacterium haemolyticum strain UGAL515B_03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2955605..2966936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK026_RS13355 (OK026_13370) - 2956059..2956526 (-) 468 WP_081556664.1 GNAT family N-acetyltransferase -
  OK026_RS13360 (OK026_13375) parC 2956693..2959062 (+) 2370 WP_081556665.1 DNA topoisomerase IV subunit A -
  OK026_RS13365 (OK026_13380) - 2959059..2960612 (+) 1554 WP_081556666.1 PAS domain-containing sensor histidine kinase -
  OK026_RS13370 (OK026_13385) pilR 2960605..2961936 (+) 1332 WP_043636466.1 sigma-54 dependent transcriptional regulator Regulator
  OK026_RS13375 (OK026_13390) - 2962327..2963085 (+) 759 WP_052370474.1 ABC transporter substrate-binding protein -
  OK026_RS13380 (OK026_13395) - 2963397..2963612 (+) 216 WP_043593468.1 YdcH family protein -
  OK026_RS13385 (OK026_13400) - 2963826..2964119 (-) 294 WP_081556668.1 hypothetical protein -
  OK026_RS13390 (OK026_13405) alr 2964237..2965466 (-) 1230 WP_194427302.1 alanine racemase -
  OK026_RS13395 (OK026_13410) - 2965803..2966618 (+) 816 WP_043636630.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 48890.98 Da        Isoelectric Point: 5.4355

>NTDB_id=750495 OK026_RS13370 WP_043636466.1 2960605..2961936(+) (pilR) [Chromobacterium haemolyticum strain UGAL515B_03]
MAKSSLRVLVIDDEPDIRELLELTLIKMGLDVATAASVGAAKLSLNSQPFDLALTDMRLPDGEGIEVVRHIAEQGLDVPI
AVITAYGNTDNAVLAMKAGAFDYLQKPVSLAQLRSLVKSVLRVDNGKTEAAVRLDGESPAIQEALRLIGKLARSQAAVYV
SGESGTGKEQAARMIHEHSARAERPFIPVNCGAIPETLMESEFFGYRKGAFTGADNDRDGFFQQANGGTLFLDEVADLPL
AMQVKLLRAIQEKKVRRLGNAQEEAVDVRIICATHKDLAARVDAGNFRQDLYYRLNVLPLRMPPLRELREDLPRYIASLL
ERFSPDEKPRLAPAALKALLEYNYPGNFRELENILERAVALANDARIELRDLQLLPSDHGGQGDGEAPTCADGEALQDFL
DRVEREAILKALESTRFNRTQAAKTLGVTFRSMRYRMERLGIK

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=750495 OK026_RS13370 WP_043636466.1 2960605..2961936(+) (pilR) [Chromobacterium haemolyticum strain UGAL515B_03]
ATGGCTAAATCCTCCCTGCGCGTGCTGGTGATCGACGATGAACCGGACATCCGCGAACTGCTGGAACTGACCCTGATCAA
GATGGGGCTGGACGTGGCCACCGCCGCCAGCGTCGGCGCCGCCAAACTCAGCCTGAACAGCCAGCCCTTCGACCTGGCAC
TGACCGATATGCGCCTGCCGGACGGCGAGGGCATCGAAGTGGTGCGCCATATCGCCGAACAGGGCCTGGACGTGCCCATC
GCCGTGATCACCGCCTACGGCAACACCGACAACGCGGTGCTGGCGATGAAGGCCGGCGCCTTCGACTATCTGCAAAAACC
GGTCAGCCTGGCTCAATTGCGCAGCCTGGTGAAATCCGTGCTGCGTGTGGACAACGGCAAAACCGAGGCCGCGGTGCGGC
TGGACGGCGAATCGCCGGCGATCCAGGAAGCGCTGCGCTTGATCGGCAAGCTGGCGCGCAGCCAGGCCGCGGTTTACGTC
AGCGGCGAATCCGGCACCGGCAAGGAACAGGCGGCGCGGATGATACACGAGCACAGCGCGCGCGCCGAACGGCCATTCAT
CCCGGTCAACTGCGGCGCCATCCCGGAAACGCTGATGGAAAGCGAATTCTTCGGCTATCGCAAAGGCGCGTTCACCGGCG
CCGACAACGACCGCGACGGCTTCTTTCAACAAGCCAACGGCGGCACGCTGTTTCTGGACGAAGTGGCCGACCTGCCGCTG
GCGATGCAGGTCAAACTGCTGCGCGCGATTCAGGAAAAGAAAGTGCGCCGCCTGGGCAACGCCCAGGAAGAAGCGGTGGA
CGTGCGCATCATCTGCGCCACCCACAAGGACCTGGCGGCGCGGGTAGACGCCGGCAACTTTCGCCAGGATCTGTACTACC
GGCTAAACGTGCTGCCGCTGCGCATGCCGCCGCTGCGCGAACTGCGCGAGGACCTGCCGCGCTACATCGCCAGCCTGCTG
GAACGCTTTTCCCCCGACGAAAAGCCGCGGCTGGCGCCGGCGGCGCTCAAGGCCTTGCTGGAATACAACTATCCGGGCAA
CTTCCGCGAACTGGAAAACATCCTGGAACGCGCGGTGGCCCTGGCCAACGACGCCCGCATTGAATTGCGGGATCTGCAAC
TGCTGCCTAGCGATCACGGCGGCCAGGGCGATGGAGAGGCGCCAACTTGCGCCGATGGCGAGGCGCTGCAGGATTTTCTG
GACCGGGTGGAGCGCGAAGCCATCCTCAAGGCGCTGGAGAGCACCCGCTTCAACCGCACCCAGGCCGCCAAGACGCTGGG
CGTCACCTTCCGATCGATGCGCTATCGGATGGAAAGGCTGGGCATCAAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-300)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(400-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.202

100

0.585
  pilR Acinetobacter baumannii strain A118

45.161

100

0.474
  luxO Vibrio cholerae strain A1552

37.162

100

0.372