Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OK117_RS11170 Genome accession   NZ_CP109886
Coordinates   2410391..2411803 (-) Length   470 a.a.
NCBI ID   WP_058564301.1    Uniprot ID   A0AAJ5UHJ0
Organism   Xylella fastidiosa subsp. fastidiosa strain CFBP8073     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2405391..2416803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK117_RS11145 (OK117_11155) - 2405516..2405962 (+) 447 WP_057682388.1 pilin -
  OK117_RS11150 (OK117_11160) - 2406210..2406437 (-) 228 WP_058564297.1 hypothetical protein -
  OK117_RS11155 (OK117_11165) - 2406837..2407136 (-) 300 WP_155561232.1 hypothetical protein -
  OK117_RS11160 (OK117_11170) - 2407280..2407708 (+) 429 WP_306308946.1 pilin -
  OK117_RS11165 (OK117_11175) pilB 2408564..2410297 (+) 1734 WP_058564300.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OK117_RS11170 (OK117_11180) pilR 2410391..2411803 (-) 1413 WP_058564301.1 sigma-54 dependent transcriptional regulator Regulator
  OK117_RS11175 (OK117_11185) - 2411989..2413599 (-) 1611 WP_004090372.1 ATP-binding protein -
  OK117_RS11180 (OK117_11190) sucC 2413854..2415017 (+) 1164 WP_004090371.1 ADP-forming succinate--CoA ligase subunit beta -
  OK117_RS11185 (OK117_11195) sucD 2415046..2415918 (+) 873 WP_004090370.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51302.22 Da        Isoelectric Point: 7.2159

>NTDB_id=750392 OK117_RS11170 WP_058564301.1 2410391..2411803(-) (pilR) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHMHGRAVPLLSPSALEALEHYSFPGNVRELENILERALALTEDDHIGAADLHLPQGSLHGQGLPLPLVP
TVLPIVPADASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=750392 OK117_RS11170 WP_058564301.1 2410391..2411803(-) (pilR) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGATGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGCACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACTATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTTCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATCAATGTAATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCACACATGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGAACATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGCCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTCCCGATTGTGCCTGCGGACGCATCAGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCCTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTACGTTACAAACTAAAGAAGCTGGGTATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.422

99.787

0.583
  pilR Acinetobacter baumannii strain A118

47.034

100

0.472