Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   OHU65_RS25935 Genome accession   NZ_CP109859
Coordinates   4950786..4951148 (-) Length   120 a.a.
NCBI ID   WP_264408686.1    Uniprot ID   -
Organism   Priestia megaterium strain 207     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4945786..4956148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU65_RS25925 (OHU65_25925) - 4946276..4948906 (+) 2631 WP_264408685.1 DEAD/DEAH box helicase -
  OHU65_RS25930 (OHU65_25930) - 4949204..4950250 (+) 1047 WP_221785863.1 C40 family peptidase -
  OHU65_RS25935 (OHU65_25935) ssbB 4950786..4951148 (-) 363 WP_264408686.1 single-stranded DNA-binding protein Machinery gene
  OHU65_RS25940 (OHU65_25940) - 4951245..4951682 (+) 438 WP_116516457.1 YwpF-like family protein -
  OHU65_RS25945 (OHU65_25945) - 4952208..4952630 (+) 423 WP_264408687.1 helix-turn-helix domain-containing protein -
  OHU65_RS25950 (OHU65_25950) fabZ 4952659..4953093 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OHU65_RS25955 (OHU65_25955) - 4953177..4953998 (-) 822 WP_264408688.1 flagellar hook-basal body protein -
  OHU65_RS25960 (OHU65_25960) - 4954022..4954846 (-) 825 WP_264408689.1 flagellar hook-basal body protein -
  OHU65_RS25965 (OHU65_25965) - 4954965..4955966 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13456.15 Da        Isoelectric Point: 7.1649

>NTDB_id=750294 OHU65_RS25935 WP_264408686.1 4950786..4951148(-) (ssbB) [Priestia megaterium strain 207]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCEKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSSSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=750294 OHU65_RS25935 WP_264408686.1 4950786..4951148(-) (ssbB) [Priestia megaterium strain 207]
ATGATTAACCATATTGTTCTTGTCGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTGGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGAGAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCAGTTCTTCTTCATTTGATTCAAATCAGCAAGAAGAATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508