Detailed information NTG0750223

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OHM81_RS06055
• Genome accession: NZ_CP109857
• Coordinates: 1334644..1335537 (-)
• Length: 297 a.a.
• NCBI ID: WP_016445609.1
• Uniprot ID: A0A1H3L211
• Organism: Delftia tsuruhatensis strain GSK TC1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1329644..1340537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHM81_RS06025	argJ	1329970..1331202 (+)	1233	WP_016451021.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
OHM81_RS06030	-	1331368..1332324 (+)	957	WP_338499822.1	ATP-binding protein	-
OHM81_RS06035	mutT	1332375..1332881 (+)	507	WP_043789746.1	8-oxo-dGTP diphosphatase MutT	-
OHM81_RS06040	-	1332892..1333146 (-)	255	WP_338499823.1	DNA gyrase inhibitor YacG	-
OHM81_RS06045	zapD	1333146..1333901 (-)	756	WP_016445607.1	cell division protein ZapD	-
OHM81_RS06050	coaE	1333991..1334629 (-)	639	WP_016445608.1	dephospho-CoA kinase	-
OHM81_RS06055	pilD	1334644..1335537 (-)	894	WP_016445609.1	A24 family peptidase	Machinery gene
OHM81_RS06060	pilC	1335537..1336754 (-)	1218	WP_047326532.1	type II secretion system F family protein	Machinery gene
OHM81_RS06065	pilB	1336793..1338535 (-)	1743	WP_338500828.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OHM81_RS06075	-	1338772..1339701 (-)	930	WP_043789750.1	polyprenyl synthetase family protein	-
OHM81_RS06080	rplU	1339932..1340243 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
OHM81_RS06085	rpmA	1340259..1340516 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.37 Da
• Isoelectric Point: 6.9135

>NTDB_id=750223 OHM81_RS06055 WP_016445609.1 1334644..1335537(-) (pilD) [Delftia tsuruhatensis strain GSK TC1]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=750223 OHM81_RS06055 WP_016445609.1 1334644..1335537(-) (pilD) [Delftia tsuruhatensis strain GSK TC1]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
ACATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGTCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCTACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

3D structure

• AlphaFold DB: A0A1H3L211

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407