Detailed information NTG0750122

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PALA37_RS16980
• Genome accession: NZ_CP109850
• Coordinates: 3644779..3645651 (-)
• Length: 290 a.a.
• NCBI ID: WP_270132262.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA37
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3639779..3650651

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA37_RS16935 (PALA37_03354)	-	3640640..3640810 (-)	171	WP_003094672.1	DUF3094 family protein	-
PALA37_RS16940 (PALA37_03355)	-	3640836..3641285 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
PALA37_RS16945 (PALA37_03356)	-	3641282..3641911 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PALA37_RS16950 (PALA37_03357)	-	3642044..3642469 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PALA37_RS16955 (PALA37_03358)	-	3642466..3642936 (+)	471	WP_003094664.1	hypothetical protein	-
PALA37_RS16960 (PALA37_03359)	-	3642933..3643622 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PALA37_RS16965 (PALA37_03360)	-	3643728..3643937 (+)	210	WP_003094660.1	hypothetical protein	-
PALA37_RS16970 (PALA37_03361)	yacG	3643974..3644174 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PALA37_RS16975 (PALA37_03362)	coaE	3644171..3644782 (-)	612	WP_127429831.1	dephospho-CoA kinase	-
PALA37_RS16980 (PALA37_03363)	pilD	3644779..3645651 (-)	873	WP_270132262.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PALA37_RS16985 (PALA37_03364)	pilC	3645652..3646869 (-)	1218	WP_269974491.1	type II secretion system F family protein	Machinery gene
PALA37_RS16990 (PALA37_03365)	pilB	3646873..3648573 (-)	1701	WP_058355294.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PALA37_RS16995 (PALA37_03366)	-	3648804..3649268 (+)	465	WP_128697780.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31811.83 Da
• Isoelectric Point: 7.3860

>NTDB_id=750122 PALA37_RS16980 WP_270132262.1 3644779..3645651(-) (pilD) [Pseudomonas aeruginosa strain PALA37]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLISYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=750122 PALA37_RS16980 WP_270132262.1 3644779..3645651(-) (pilD) [Pseudomonas aeruginosa strain PALA37]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGATCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.071	96.552	0.541
pilD	Vibrio campbellii strain DS40M4	53.357	97.586	0.521
pilD	Acinetobacter baumannii D1279779	50.883	97.586	0.497
pilD	Acinetobacter nosocomialis M2	50.883	97.586	0.497
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469