Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PALA33_RS26160 | Genome accession | NZ_CP109845 |
| Coordinates | 5562922..5563794 (+) | Length | 290 a.a. |
| NCBI ID | WP_023087804.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PALA33 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5557922..5568794
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA33_RS26135 (PALA33_05181) | nadC | 5558277..5559125 (+) | 849 | WP_003104915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PALA33_RS26145 | pilA | 5559313..5559765 (-) | 453 | WP_024947914.1 | pilin | Machinery gene |
| PALA33_RS26150 (PALA33_05183) | pilB | 5559994..5561694 (+) | 1701 | WP_009875880.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PALA33_RS26155 (PALA33_05184) | pilC | 5561698..5562918 (+) | 1221 | WP_016253888.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| PALA33_RS26160 (PALA33_05185) | pilD | 5562922..5563794 (+) | 873 | WP_023087804.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PALA33_RS26165 (PALA33_05186) | coaE | 5563791..5564402 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| PALA33_RS26170 (PALA33_05187) | yacG | 5564399..5564599 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PALA33_RS26175 (PALA33_05188) | - | 5564636..5564845 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| PALA33_RS26180 (PALA33_05189) | - | 5564951..5565640 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PALA33_RS26185 (PALA33_05190) | - | 5565637..5566107 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| PALA33_RS26190 (PALA33_05191) | - | 5566104..5566529 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PALA33_RS26195 (PALA33_05192) | - | 5566662..5567291 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PALA33_RS26200 (PALA33_05193) | - | 5567288..5567737 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PALA33_RS26205 (PALA33_05194) | - | 5567763..5567933 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31869.92 Da Isoelectric Point: 7.7068
>NTDB_id=750032 PALA33_RS26160 WP_023087804.1 5562922..5563794(+) (pilD) [Pseudomonas aeruginosa strain PALA33]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=750032 PALA33_RS26160 WP_023087804.1 5562922..5563794(+) (pilD) [Pseudomonas aeruginosa strain PALA33]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |