Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   OH129_RS01635 Genome accession   NZ_CP109819
Coordinates   324870..325181 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain CC21NB04a     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 319870..330181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH129_RS01625 (OH129_01625) - 321099..321182 (+) 84 Protein_315 HAD family hydrolase -
  OH129_RS01630 (OH129_01630) nifJ 321286..324846 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  OH129_RS01635 (OH129_01635) ctsR 324870..325181 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  OH129_RS01640 (OH129_01640) ctsD 325159..326577 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  OH129_RS01645 (OH129_01645) ctsP 326570..327166 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  OH129_RS01650 (OH129_01650) - 327163..327750 (+) 588 WP_002810825.1 CDC27 family protein -
  OH129_RS01655 (OH129_01655) ctsE 327743..329305 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=749588 OH129_RS01635 WP_002779316.1 324870..325181(+) (ctsR) [Campylobacter coli strain CC21NB04a]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=749588 OH129_RS01635 WP_002779316.1 324870..325181(+) (ctsR) [Campylobacter coli strain CC21NB04a]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553