Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   OH128_RS02325 Genome accession   NZ_CP109813
Coordinates   466747..467262 (+) Length   171 a.a.
NCBI ID   WP_096738393.1    Uniprot ID   -
Organism   Campylobacter coli strain CC20JX12     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461747..472262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH128_RS02300 (OH128_02300) - 462207..462545 (+) 339 WP_175056166.1 hypothetical protein -
  OH128_RS02305 (OH128_02305) - 462554..463279 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  OH128_RS02310 (OH128_02310) dxr 463276..464346 (+) 1071 WP_264378388.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  OH128_RS02315 (OH128_02315) - 464348..465742 (+) 1395 WP_052803818.1 M99 family carboxypeptidase catalytic domain-containing protein -
  OH128_RS02320 (OH128_02320) tsaD 465739..466746 (+) 1008 WP_071170083.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  OH128_RS02325 (OH128_02325) ctsG 466747..467262 (+) 516 WP_096738393.1 type II secretion system protein Machinery gene
  OH128_RS02330 (OH128_02330) - 467262..468503 (+) 1242 WP_264378389.1 DUF2920 family protein -
  OH128_RS02335 (OH128_02335) - 468515..470341 (+) 1827 WP_158191974.1 motility associated factor glycosyltransferase family protein -
  OH128_RS02340 (OH128_02340) - 470424..472154 (+) 1731 WP_264378390.1 flagellin A -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18635.58 Da        Isoelectric Point: 7.1355

>NTDB_id=749545 OH128_RS02325 WP_096738393.1 466747..467262(+) (ctsG) [Campylobacter coli strain CC20JX12]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVKFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFISSSSSKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=749545 OH128_RS02325 WP_096738393.1 466747..467262(+) (ctsG) [Campylobacter coli strain CC20JX12]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGTACCAAAGAAGTAAAATTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTATAAGCTCTTCTAGTAGCAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924