Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OCX11_RS08510 Genome accession   NZ_AP024726
Coordinates   1734678..1735280 (-) Length   200 a.a.
NCBI ID   WP_000271550.1    Uniprot ID   P66748
Organism   Staphylococcus aureus strain 59482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1729678..1740280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX11_RS08490 secDF 1730549..1732828 (-) 2280 WP_000749795.1 protein translocase subunit SecDF -
  OCX11_RS08495 yajC 1733103..1733363 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  OCX11_RS08500 - 1733382..1733951 (-) 570 Protein_1673 tRNA guanosine(34) transglycosylase Tgt -
  OCX11_RS08505 ruvB 1733945..1734646 (-) 702 Protein_1674 Holliday junction branch migration DNA helicase RuvB -
  OCX11_RS08510 ruvA 1734678..1735280 (-) 603 WP_000271550.1 Holliday junction branch migration protein RuvA Machinery gene
  OCX11_RS08515 - 1735294..1735749 (-) 456 WP_000368902.1 ACT domain-containing protein -
  OCX11_RS08520 obgE 1735762..1737054 (-) 1293 WP_000496100.1 GTPase ObgE -
  OCX11_RS08525 rpmA 1737539..1737823 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  OCX11_RS08530 - 1737835..1738155 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  OCX11_RS08535 rplU 1738161..1738469 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  OCX11_RS08540 mreD 1738705..1739235 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  OCX11_RS08545 mreC 1739235..1740077 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22281.50 Da        Isoelectric Point: 6.1244

>NTDB_id=74954 OCX11_RS08510 WP_000271550.1 1734678..1735280(-) (ruvA) [Staphylococcus aureus strain 59482]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIRTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=74954 OCX11_RS08510 WP_000271550.1 1734678..1735280(-) (ruvA) [Staphylococcus aureus strain 59482]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCGTACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACAGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

43.216

99.5

0.43

Multiple sequence alignment