Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AZSP09_RS08760 Genome accession   NZ_AP021844
Coordinates   1886418..1887791 (-) Length   457 a.a.
NCBI ID   WP_152089797.1    Uniprot ID   A0A5H2Y754
Organism   Azospira sp. I09     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1881418..1892791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZSP09_RS08745 (AZSP09_17240) - 1883043..1884200 (+) 1158 WP_152089794.1 pyridoxal phosphate-dependent aminotransferase -
  AZSP09_RS08750 (AZSP09_17250) - 1884346..1885374 (-) 1029 WP_152089795.1 hypothetical protein -
  AZSP09_RS08755 (AZSP09_17260) ampD 1885846..1886418 (-) 573 WP_152089796.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AZSP09_RS08760 (AZSP09_17270) pilR 1886418..1887791 (-) 1374 WP_152089797.1 sigma-54 dependent transcriptional regulator Regulator
  AZSP09_RS08765 (AZSP09_17280) - 1887772..1889385 (-) 1614 WP_152089798.1 HAMP domain-containing sensor histidine kinase -
  AZSP09_RS08770 - 1889395..1889619 (-) 225 WP_152089799.1 PP0621 family protein -
  AZSP09_RS08780 (AZSP09_17300) ispB 1889878..1890846 (-) 969 WP_152089800.1 octaprenyl diphosphate synthase -
  AZSP09_RS08785 (AZSP09_17310) rplU 1891080..1891391 (+) 312 WP_014235285.1 50S ribosomal protein L21 -
  AZSP09_RS08790 (AZSP09_17320) rpmA 1891410..1891670 (+) 261 WP_014235286.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49583.42 Da        Isoelectric Point: 4.7849

>NTDB_id=74930 AZSP09_RS08760 WP_152089797.1 1886418..1887791(-) (pilR) [Azospira sp. I09]
MAQAKGERRARGALARVLVVDDEADIRELVDLTLSRMGLAADCAGTVAEAREFLARESYQLCLTDMRLPDGEGLELVRLI
GEQYSETPVAVITAFGSTENAVAALKAGAFDYLAKPVALDQLRTLIKSAIDLPVASAAEGAPRSEALQLLGDSRAMSTVR
EIIAKLARSQAPVYISGESGCGKELAARLIHEQSNRSQAPFVPVNCGAIPENLMESEFFGYRKGAFTGAEQDREGFFQAA
GGGTLFLDEVADLPLSMQVKLLRAIQEKRVRKVGATVEEAVDVRLICATHQDLKACVEAGTFRQDLYYRLNVIELRMPPL
RERAEDIPQLARACLDRLAHQAPALPLTPAAEAALCRYTFPGNVRELENILERATALCSGSEIDEGDLQLSPADDGHPDA
GSEGRGGESLDTYLDRLERQAIQEAVVQTQGNRTAAARLLGITFRSLRYRMARLGIE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=74930 AZSP09_RS08760 WP_152089797.1 1886418..1887791(-) (pilR) [Azospira sp. I09]
ATGGCTCAGGCCAAAGGTGAACGCCGCGCCAGGGGGGCGCTGGCCCGGGTGCTGGTGGTGGATGACGAAGCGGATATCCG
GGAACTGGTGGACCTCACCCTGTCGCGCATGGGGCTGGCGGCGGATTGCGCCGGCACCGTGGCCGAGGCTCGGGAGTTCC
TTGCCCGGGAGTCTTACCAGCTGTGCTTGACCGACATGCGTTTGCCCGATGGGGAAGGGCTGGAACTGGTGCGCCTCATC
GGCGAGCAGTACAGCGAGACGCCGGTGGCCGTGATCACCGCCTTTGGCAGCACCGAGAACGCGGTGGCGGCCCTCAAGGC
CGGGGCCTTCGACTATCTGGCCAAGCCGGTGGCCCTGGATCAGCTGCGTACCCTGATCAAGTCGGCCATCGATCTGCCGG
TGGCATCCGCGGCCGAGGGGGCGCCGCGCAGCGAGGCTCTGCAGCTGCTCGGCGATTCCCGGGCCATGAGCACGGTGCGG
GAGATCATCGCCAAGCTGGCCCGCAGCCAGGCGCCGGTTTACATCTCCGGCGAATCCGGCTGCGGCAAGGAACTGGCGGC
CCGCCTCATCCACGAGCAGAGCAACCGCAGCCAGGCGCCTTTCGTTCCGGTGAACTGCGGGGCCATCCCCGAGAACCTCA
TGGAAAGCGAGTTCTTCGGTTATCGCAAGGGCGCCTTCACCGGTGCCGAGCAGGATCGGGAAGGATTCTTCCAGGCGGCG
GGGGGCGGCACCCTGTTTCTCGACGAGGTGGCCGACCTGCCCCTGTCCATGCAGGTCAAGCTGCTGCGGGCCATCCAGGA
AAAGCGGGTGCGCAAGGTCGGCGCCACCGTGGAGGAGGCGGTGGATGTGCGCCTCATCTGTGCCACCCACCAGGACCTGA
AGGCCTGCGTCGAGGCCGGCACCTTCCGCCAGGATTTGTACTACCGTCTCAACGTCATCGAGTTGCGCATGCCGCCGCTG
CGGGAGCGGGCCGAGGACATTCCCCAGCTGGCCCGCGCCTGTCTCGACCGTCTGGCTCATCAGGCGCCGGCGTTGCCGCT
GACGCCCGCGGCCGAAGCGGCGCTGTGTCGCTACACCTTCCCCGGCAACGTCCGCGAACTGGAGAATATTCTCGAGCGGG
CCACGGCGCTATGCAGTGGCAGCGAGATCGACGAAGGCGACCTGCAGCTTTCCCCTGCCGATGACGGTCACCCCGATGCC
GGTTCCGAAGGGCGTGGCGGCGAGTCTCTCGATACCTATCTGGATCGTCTGGAGCGTCAGGCGATTCAGGAGGCGGTGGT
TCAGACCCAGGGCAATCGCACGGCGGCGGCGCGCCTGCTCGGCATCACCTTCCGCTCCCTGCGCTATCGCATGGCTCGTC
TGGGGATCGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(150-315)

Response regulator receiver domain (Response_reg)

(17-126)

Bacterial regulatory protein, Fis family (HTH_8)

(414-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5H2Y754

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.938

98.031

0.597
  pilR Acinetobacter baumannii strain A118

46.32

100

0.468
  luxO Vibrio cholerae strain A1552

38.018

94.967

0.361

Multiple sequence alignment